Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00700 ATGGAAAGAGGCCACTTCAGGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGCGTTTCCGTTCTATTTTTCTCGGTCTAAGCAAGACGTTTCAGCTGTGGTATCAGCTCTTGTTGAAGTTATTGGTGGCAATCCACCGCCAAAAGATCCAACAACACTCTCTCACTCCACTGCTGTTCACAGTAATTCCGACGAACCATCACATCCACCACAACTCCAAGATGCTCGCAAGGTGTTTGGTGAAATTCATGACTGGTGATGTGGCTGTGTGCGAAGGAAACGCAAAAAGACAGTACAGAGGAGTGCGACAGCGACCGTGGGGGAAGTGGGCCGCGGAGATTCGCGACCCGAAGAAAGCAGCCAGAGTTTGGCTCGGAACTTTTCCCACCGCGGAGGCTGCTGCACTTGCTTACGACGAAGCAGCTCTCAGATTCAAAGGAACCAAAGCCAAGCTCAATTTTCCAGAAAAAGTTCGTCTCTCAGGGGAATTAGGTTACCTCACAAATCGTCCACCGTCATTGCAACCCTCTTCAACTCCCTTCCAATTGCTTCCTCCTCACACTGCAACTAATAATGCTGCTCCCATTCTTTGTTCCTCTTCTTCGCCATCGTCTTCAACCTTTTCGATCAACTCCGCGCCTTCTTCTTCTGAACCTCCAACCAAACAACAAAAACGTTGA 678 0.4838 MERGHFRKKKKKKKKKKRFRSIFLGLSKTFQLWYQLLLKLLVAIHRQKIQQHSLTPLLFTVIPTNHHIHHNSKMLARCLVKFMTGDVAVCEGNAKRQYRGVRQRPWGKWAAEIRDPKKAARVWLGTFPTAEAAALAYDEAALRFKGTKAKLNFPEKVRLSGELGYLTNRPPSLQPSSTPFQLLPPHTATNNAAPILCSSSSPSSSTFSINSAPSSSEPPTKQQKR 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00700 225 PRINTS Ethylene responsive element binding protein signature 120 136 IPR001471 GO:0003700|GO:0006355
Viun3g00700 225 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Viun3g00700 225 MobiDBLite consensus disorder prediction 168 225 - -
Viun3g00700 225 Gene3D AP2/ERF domain 96 156 IPR036955 GO:0003700|GO:0006355
Viun3g00700 225 SMART rav1_2 97 160 IPR001471 GO:0003700|GO:0006355
Viun3g00700 225 FunFam Ethylene-responsive transcription factor 2 96 155 - -
Viun3g00700 225 Pfam AP2 domain 97 146 IPR001471 GO:0003700|GO:0006355
Viun3g00700 225 ProSiteProfiles AP2/ERF domain profile. 97 154 IPR001471 GO:0003700|GO:0006355
Viun3g00700 225 SUPERFAMILY DNA-binding domain 97 155 IPR016177 GO:0003677
Viun3g00700 225 PANTHER DNA-BINDING DOMAIN 51 204 IPR044808 GO:0003700|GO:0009873
Viun3g00700 225 CDD AP2 97 155 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00700 Viun-Chr3 4347736 4352111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00700 95 179 AP2-EREBP Transcription Factor Family AT5G61890 74.419 1.98e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun3g00700 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00700 - - vun:114176190 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00700 3 4347736 4352111 Viun3g00700 3 4347736 4352111 ECH
Viun3g00700 3 4347736 4352111 Viun9g01597 9 23608570 23610508 ECH
Viun3g00700 3 4347736 4352111 Viun9g01597 9 23608570 23610508 PCT