Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00696 ATGCCTTTTCAAATCATGGATCACAGAGGCGTTTCTGCTTCATCCCACTTTTTTGAAGACGTTTCCTTTCGTTCTGAGAGGAATGTTGGATTACGGAAACCGATATCCATTAATGATCATTACCCACAAGGAAGCAATGGAATGGTAGCATCACCAGGAAGCATTTTGAACAATACACCACCCCTTGATGTAAATGCAAAAGCTGGCTTGCTGATGTCCCAGGCTAGTCTACCTGGGGATAGTATGGATTCCAAGGAATCATTGAATTATCGCCCCAAATCATTGTCTGATGCATCTCTGCAGTCGGCGTCTACCTCATATGGCTTAATTGGGAACAAGATTGTTAGCAATGCTGGCCCCTGTGAAAGTAGTTTATTCTCGAGCTCTATGTCTGAGATATTTAGCCGAAAGTTACGGTTATTTGGAAATGATGTTCAGTCTGATAGGACAATTGCTGCTGGTTTCCCAGAGGAACCATGTAAATCTCTTAAAGAAATGGAGGCTGACACTATAGGGAATCTCCTTCCTGATGAAGATGATTTGTTTTCTGGTGTTGTTGACGAGTTAGGATGCAGTTCTCATGCCAAAACAATTGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGATGGAAGGAGACGAACATTTAAGTTCAGGAAAAATAATGAATGGTCTTGATGGAGATTATGGTTTCTTTGGAGGTTCTAAAGGAAAACTTCCTTTTGGTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTTGAAGACTCTGAGCTAAAGGATCTCTTTGAGCAATATGGGGATATCCGAACCATTTATACAGCCTGTAAGCATCGTGGGTTTGTCATGATTTCTTATCATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCTTTGAGGTCCAGGAAACTTGATATACATTATTCAATTCCTAAGGTCAATGCTCCAGAAAAGGATATTGGCCATGGTACACTGATGCTATCTGGACTTGATTCATCTGTTTTAAATGATGAGCTTAAAAAGATTTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATCCAGAAATGAATCATCACAAATTTATTGAGTTTTATGATGTCCGAGCTGCGGAATCTGCTCTTCGTGCTTTAAATAAGATTGACATTGCCGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGTTTGATGCACCAGTCGCATAAGGGGCAAGATGAGCGAGATTTGGGTCAGAGTATTATGGACAATTTACCATTAAGATCAAAGGCAACAGGGTCTTCTGCAGTAATTGGATCTGGGGTCTTGGAAAATGGATACAATCAGAGGTTTCAATCTGCAGTGCGACAACCTATTAATGCATTTATGGATAATTCATTCATTAATGTGAACAACTCTAGTATTCACAATCCTGTGAGAGGGGCATCTGCTGGAAAAGTGTCTGTAGTTTCTGAGTCTAATGGCTATATTGATGCAATGAAATTTGCATCTAATTCGAGATTTCATCCTCATTCCTTACCTGAGTACCGTGATAGTTTAGCTAATGGTAGTCCTTATAACTTTTCTAGCACCATTAGCAACTTGGCTAACAATATAGGTGCTGGAGCTACAGAACCCTCTGATGGCAGGCATATTCAGGGAATGGGATCAACTGGGAACATAGCAGAATTTAATGCAGGAGGAAATGGCATACGCCCACATGGACTTTATCATATGTGGAACAGCTCCAATTTGCAACAGCAACCTTCATCGAATAATGTGCTTTGGCAGAAATCACCATCATTTGTTAATGATGCTTGTTCTCCAAACCTTCCACAGATGTCAAGCTTTGCTAGAACACCGCCACATTTGCTGAGAACACCACATATAATGGACCACCATGTTGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGGCCAAATTCTTATTTGGGAGGGTCCCCTGATGCTTCTGGTTTTCGCTTGGGCTCTCTAGGGAGTGGAGGTTTTCATGGTTCATGGCAATTTCATCCCCTGGATTTTCCTTCTCACAATGTGTTTTCTCATGTTGGTGGGAATGGCACTGAACTGACATCAAATGCAGCAGGGCAGAACTCTCCTAAGCAGTTATCTCATGTCTTCCCTGCGAGGCATCCCATGTCTTCATTGTCAAAATTTGATCCTACCAATGACCGAATGAGAAACCTTTATCACCGTCGAAACGAAGCAAGCACCAACAATGTTGACAAGAAGCAATACGAGCTTGACCTAGGTCGTATATTGCGCGGGGAAGACAGCCGAACTACCCTTATGATAAAAAATATTCCTAACAAGCTGTGGCAGCTGAGCATTTGGCATTTCTCTTCTTTTGAAGTCTCAGTTCTTGCTTGCTAA 2424 0.4142 MPFQIMDHRGVSASSHFFEDVSFRSERNVGLRKPISINDHYPQGSNGMVASPGSILNNTPPLDVNAKAGLLMSQASLPGDSMDSKESLNYRPKSLSDASLQSASTSYGLIGNKIVSNAGPCESSLFSSSMSEIFSRKLRLFGNDVQSDRTIAAGFPEEPCKSLKEMEADTIGNLLPDEDDLFSGVVDELGCSSHAKTIDDFEDFDLFSSGGGMEMEGDEHLSSGKIMNGLDGDYGFFGGSKGKLPFGEQPSRTLFVRNINSNVEDSELKDLFEQYGDIRTIYTACKHRGFVMISYHDLRAAQNAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELKKIFGFYGEIKEIYEYPEMNHHKFIEFYDVRAAESALRALNKIDIAGKQIKLEPGHPSLMHQSHKGQDERDLGQSIMDNLPLRSKATGSSAVIGSGVLENGYNQRFQSAVRQPINAFMDNSFINVNNSSIHNPVRGASAGKVSVVSESNGYIDAMKFASNSRFHPHSLPEYRDSLANGSPYNFSSTISNLANNIGAGATEPSDGRHIQGMGSTGNIAEFNAGGNGIRPHGLYHMWNSSNLQQQPSSNNVLWQKSPSFVNDACSPNLPQMSSFARTPPHLLRTPHIMDHHVGSAPVVTASPWERPNSYLGGSPDASGFRLGSLGSGGFHGSWQFHPLDFPSHNVFSHVGGNGTELTSNAAGQNSPKQLSHVFPARHPMSSLSKFDPTNDRMRNLYHRRNEASTNNVDKKQYELDLGRILRGEDSRTTLMIKNIPNKLWQLSIWHFSSFEVSVLAC 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00696 807 CDD RRM1_MEI2_like 251 326 IPR034453 -
Viun3g00696 807 SMART rrm1_1 338 406 IPR000504 GO:0003723
Viun3g00696 807 SMART rrm1_1 253 321 IPR000504 GO:0003723
Viun3g00696 807 Gene3D - 246 335 IPR012677 -
Viun3g00696 807 FunFam Protein MEI2-like 1 336 428 - -
Viun3g00696 807 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 325 IPR000504 GO:0003723
Viun3g00696 807 FunFam MEI2-like protein 5 isoform 2 241 335 - -
Viun3g00696 807 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 318 IPR000504 GO:0003723
Viun3g00696 807 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 339 404 IPR000504 GO:0003723
Viun3g00696 807 SUPERFAMILY RNA-binding domain, RBD 249 407 IPR035979 GO:0003676
Viun3g00696 807 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 410 IPR000504 GO:0003723
Viun3g00696 807 PANTHER RNA RECOGNITION MOTIF-CONTAINING 81 788 - -
Viun3g00696 807 Gene3D - 336 430 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00696 Viun-Chr3 4315742 4320739 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00696 250 403 Eukaryotic Initiation Factors Gene Family AT1G71770 25.153 1.80e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00696 - - gmx:106798747 1352.42