Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00694 ATGCCTTTTCAAATCATGGATCACAGAGGCGTTTCTGCTTCATCCCACTTTTTTGAAGACGTTTCCTTTCGTTCTGAGAGGAATGTTGGATTACGGAAACCGATATCCATTAATGATCATTACCCACAAGGAAGCAATGGAATGGTAGCATCACCAGGAAGCATTTTGAACAATACACCACCCCTTGATGTAAATGCAAAAGCTGGCTTGCTGATGTCCCAGGCTAGTCTACCTGGGGATAGTATGGATTCCAAGGAATCATTGAATTATCGCCCCAAATCATTGTCTGATGCATCTCTGCAGTCGGCGTCTACCTCATATGGCTTAATTGGGAACAAGATTGTTAGCAATGCTGGCCCCTGTGAAAGTAGTTTATTCTCGAGCTCTATGTCTGAGATATTTAGCCGAAAGTTACGGTTATTTGGAAATGATGTTCAGTCTGATAGGACAATTGCTGCTGGTTTCCCAGAGGAACCATGTAAATCTCTTAAAGAAATGGAGGCTGACACTATAGGGAATCTCCTTCCTGATGAAGATGATTTGTTTTCTGGTGTTGTTGACGAGTTAGGATGCAGTTCTCATGCCAAAACAATTGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGATGGAAGGAGACGAACATTTAAGTTCAGGAAAAATAATGAATGGTCTTGATGGAGATTATGGTTTCTTTGGAGGTTCTAAAGGAAAACTTCCTTTTGGTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTTGAAGACTCTGAGCTAAAGGATCTCTTTGAGCAATATGGGGATATCCGAACCATTTATACAGCCTGTAAGCATCGTGGGTTTGTCATGATTTCTTATCATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCTTTGAGGTCCAGGAAACTTGATATACATTATTCAATTCCTAAGGTCAATGCTCCAGAAAAGGATATTGGCCATGGTACACTGATGCTATCTGGACTTGATTCATCTGTTTTAAATGATGAGCTTAAAAAGATTTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATCCAGAAATGAATCATCACAAATTTATTGAGTTTTATGATGTCCGAGCTGCGGAATCTGCTCTTCGTGCTTTAAATAAGATTGACATTGCCGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGTTTGATGCACCAGTCGCATAAGGGGCAAGATGAGCGAGATTTGGGTCAGAGTATTATGGACAATTTACCATTAAGATCAAAGGCAACAGGGTCTTCTGCAGTAATTGGATCTGGGGTCTTGGAAAATGGATACAATCAGAGGTTTCAATCTGCAGTGCGACAACCTATTAATGCATTTATGGATAATTCATTCATTAATGTGAACAACTCTAGTATTCACAATCCTGTGAGAGGGGCATCTGCTGGAAAAGTGTCTGTAGTTTCTGAGTCTAATGGCTATATTGATGCAATGAAATTTGCATCTAATTCGAGATTTCATCCTCATTCCTTACCTGAGTACCGTGATAGTTTAGCTAATGGTAGTCCTTATAACTTTTCTAGCACCATTAGCAACTTGGCTAACAATATAGGTGCTGGAGCTACAGAACCCTCTGATGGCAGGCATATTCAGGGAATGGGATCAACTGGGAACATAGCAGAATTTAATGCAGGAGGAAATGGCATACGCCCACATGGACTTTATCATATGTGGAACAGCTCCAATTTGCAACAGCAACCTTCATCGAATAATGTGCTTTGGCAGAAATCACCATCATTTGTTAATGATGCTTGTTCTCCAAACCTTCCACAGATGTCAAGCTTTGCTAGAACACCGCCACATTTGCTGAGAACACCACATATAATGGACCACCATGTTGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGGCCAAATTCTTATTTGGGAGGGTCCCCTGATGCTTCTGGTTTTCGCTTGGGCTCTCTAGGGAGTGGAGGTTTTCATGGTTCATGGCAATTTCATCCCCTGGATTTTCCTTCTCACAATGTGTTTTCTCATGTTGGTGGGAATGGCACTGAACTGACATCAAATGCAGCAGGGCAGAACTCTCCTAAGCAGTTATCTCATGTCTTCCCTGCGAGGCATCCCATGTCTTCATTGTCAAAATTTGATCCTACCAATGACCGAATGAGAAACCTTTATCACCGTCGAAACGAAGCAAGCACCAACAATGTTGACAAGAAGCAATACGAGCTTGACCTAGGTCGTATATTGCGCGGGGAAGACAGCCGAACTACCCTTATGATAAAAAATATTCCTAACAAGTATACTTCAAAGATGCTTCTTGCTGCAATAGATGAGCAATGTAAGGGAACTTACGATTTCCTCTATTTACCGATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATTCCCTTCCATCAGGCTTTTGATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTAGCCTCACTGGCATATGCCCGAATTCAAGGAAAAGCTTCTCTCATTGCTCATTTTCAGAACTCAAGCCTGATGAACGAAGACAAGCGTTGCCGTCCTATCCTCTTCCATACCGATGGCCCAAATGCCGGTGATCCGGAACCTTTCCCCATGGGTGCCAACATCAGACTGCGAGCCGGAAAATCTCGCATCGGCGGCGAGGAGAATCGAAGCCAAGGGAGTCCTTCAGCTCTGGCAAATGGAGAAGAGTGTGGTAATGGAATAGACTCTTCAAAAAACTAA 2841 0.4182 MPFQIMDHRGVSASSHFFEDVSFRSERNVGLRKPISINDHYPQGSNGMVASPGSILNNTPPLDVNAKAGLLMSQASLPGDSMDSKESLNYRPKSLSDASLQSASTSYGLIGNKIVSNAGPCESSLFSSSMSEIFSRKLRLFGNDVQSDRTIAAGFPEEPCKSLKEMEADTIGNLLPDEDDLFSGVVDELGCSSHAKTIDDFEDFDLFSSGGGMEMEGDEHLSSGKIMNGLDGDYGFFGGSKGKLPFGEQPSRTLFVRNINSNVEDSELKDLFEQYGDIRTIYTACKHRGFVMISYHDLRAAQNAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELKKIFGFYGEIKEIYEYPEMNHHKFIEFYDVRAAESALRALNKIDIAGKQIKLEPGHPSLMHQSHKGQDERDLGQSIMDNLPLRSKATGSSAVIGSGVLENGYNQRFQSAVRQPINAFMDNSFINVNNSSIHNPVRGASAGKVSVVSESNGYIDAMKFASNSRFHPHSLPEYRDSLANGSPYNFSSTISNLANNIGAGATEPSDGRHIQGMGSTGNIAEFNAGGNGIRPHGLYHMWNSSNLQQQPSSNNVLWQKSPSFVNDACSPNLPQMSSFARTPPHLLRTPHIMDHHVGSAPVVTASPWERPNSYLGGSPDASGFRLGSLGSGGFHGSWQFHPLDFPSHNVFSHVGGNGTELTSNAAGQNSPKQLSHVFPARHPMSSLSKFDPTNDRMRNLYHRRNEASTNNVDKKQYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFDGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRLRAGKSRIGGEENRSQGSPSALANGEECGNGIDSSKN 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00694 946 MobiDBLite consensus disorder prediction 910 946 - -
Viun3g00694 946 FunFam MEI2-like protein 5 isoform 2 241 335 - -
Viun3g00694 946 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 318 IPR000504 GO:0003723
Viun3g00694 946 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 339 404 IPR000504 GO:0003723
Viun3g00694 946 Pfam RNA recognition motif 2 777 873 IPR007201 -
Viun3g00694 946 SUPERFAMILY RNA-binding domain, RBD 779 864 IPR035979 GO:0003676
Viun3g00694 946 CDD RRM3_MEI2_like 780 865 IPR034454 -
Viun3g00694 946 SUPERFAMILY RNA-binding domain, RBD 249 408 IPR035979 GO:0003676
Viun3g00694 946 SMART rrm1_1 338 406 IPR000504 GO:0003723
Viun3g00694 946 SMART rrm1_1 779 855 IPR000504 GO:0003723
Viun3g00694 946 SMART rrm1_1 253 321 IPR000504 GO:0003723
Viun3g00694 946 CDD RRM1_MEI2_like 251 326 IPR034453 -
Viun3g00694 946 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 325 IPR000504 GO:0003723
Viun3g00694 946 Gene3D - 336 430 IPR012677 -
Viun3g00694 946 PANTHER RNA RECOGNITION MOTIF-CONTAINING 81 911 - -
Viun3g00694 946 FunFam Protein MEI2-like 1 336 428 - -
Viun3g00694 946 Gene3D - 246 335 IPR012677 -
Viun3g00694 946 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 410 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00694 Viun-Chr3 4314561 4321994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00694 250 403 Eukaryotic Initiation Factors Gene Family AT1G71770 25.153 2.40e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00694 - - gmx:106798747 1650.57