Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun3g00689 | ATGCATTTCGCGAATCTGGATGACACTCCGATGTTCCGCCAACAGATGCAGTGTTTGGAGGAAAGTGCAGAATCGTTGCGCGTGAGATGCTGCAAGTTCTATAAAGGATGTCGAAAGTATACGGAAGGTCTTGGAGAGGCATATGATGGGGACATCGCATTTGCCAGTGCCATAGAAAGCTTCGGAGGCGGGCAGAATGATCCTCATTTTATTGCTTTGGGAGGACCTGTTTTGACCAAATTTACTCTAGCGTTGAGAGAAATCAGTACATACAAGGAACTGCTCCGGTTACAAGTAGATTACATTTTCAATCATCGGTTACAACCGATTGTCAATGTTGACATCCATGAAGTCAAGGAAGCTCGAAAACGTTTTGATAAATCCTCCCTTGTATATGATCAGGCACGTGAAAAATTTATGTCACTCAGAAAAAGTACTAAGATTGACATTGCCACTGTCATTGAAGAGGAACTGCAAGAGGCAAGAGCATCATTTGAGGAGGCCCGTTTCAATTTGGTTAGCACTCTTAATAACGTTGAGGTGAAGAAGAGATTCGAGTTTTTAGAGGCTGTAACTGGAATTATGGATGCTCATTTTCGATACTTTCAACAGGGGTATCAGCTATTGCATCAGATGGAACCTTTCATCAATGAGATTATGGATTATGTACATCAGTCAAGAGAAAATTTCAATAACGAGCAGATTCAACTTTATCAAAGAATGCAAGACTACAAGAAACAAGCTTATGAAGAAAGTAGGTTGTCCTTGAGTGGTCCCTATGGTTCTCCTCTTGGAGACTCTGCACATCCATTTTCTAGGATATCAAATGAGGCTGCAGATGTAGTAATGGAATCTGCAGCAAATGGAAAGGTTCAAATCATTCGACAAGGACATCTTTCAAAACGATCCTCCAATTTGAGAGCTGATTGGAAAAGAAGGTATTTTGTTCTTGACAGTCGGGGAATGTTATACTACTACCGCAAACCATGGAACGGGTCATATGGCAGCAATCAACCATCTCCAAAGAAGAATAGTGGCATTGAAAATGGTTCTGGGATTCTAAGTCGATGGCTTTCTTCTCATTACCATGGAGGCGTCCATGATGAAAGATCTATAGCACGTCATACAGTTAACCTGCTAACATCAACAATCAAGATTGATGCTGATCAGTCAGATTTGAGATTCTGCTTCAGAATTATTTCGCCTACAAAGAACTATACGTTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATGCAAAAGATAAATGGAGTAATTGCTACCTTGTTGACTGTCCAAACACTGGGAACGCCTCCGTCAGCTGACTCAGAAAACGACGACTCTAACTCTGATGACAATATTGATAAGTCAGAAAGTTATCCAGATGATGATCATGCTTTGAAAGCGAAGTCTGCATTAGATAAACCCACCCGTAATAAGCACTTACGTTCATCTAGAAGTATGCACTTACATACACACACTATGAGAACTGAAAAGCCAATTGATGTTCTTAGAAGTGTAAGCGGAAATGATAAATGTGCTGATTGTGGTAAACCTGAACCGGACTGGGCATCCTTAAACCTTGGCATCCTCATATGCATTGAGTGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCGCTGACACTTGATGTTAAAGTTTGGGATTCCTCTGTCTTAAGTATGCTTAAATCACTAGGCAATCTTTTTGCAAACTCAGTTTGGGAGGAGTTGTTGCATTCACAGGGTAATTTGCAAACTGTTGACACCCTTGCTAGTTCATCCAAGGAAAATGAAGAGGAGATCTTCCATGCAAGAAAGCCAAAACATGACGATCCGATTTTAGTAAAGGAAAGGTTCATTCATGCAAAGTATTCTGAGAAAATATTTATTCCCCGGATCACGGAAAGCCACCCTATCCATTCACTAGCGCAAAAGTTGCAGGAAAGCATCTGTGCAAATGACAAGAAAGCAGTGTACCAGCTTATTGTTAAGTTGAATGTTGACGTGAATACCATCGGTTGTCAAGCATTGTCTGGTGACACTTTGGACATGGCTTCAAGTAATTTAAACATTGCATCTCAAAGTGAAAATCAGGTCGTTGAGGACGTAAAAGATGGCTCTAGCGCGCTTCACCTGGCTTGCCTAAATAGTGACAATGGCATGGTGGAGCTACTCCTACAGCTTGGGGCAGATATAAATGCTTCTGATTCCAGAGGTCGGACACCACTTCATTGTTGTATTATTGGAGGGAAGACTGCAGCTGCAAAAGTTCTTATCTCGAGGGGAGCGAATACATATGTGGCAGATAAAGAAGGCAACACTCCTATTAAGCTTGCAACAGAATCCCAAACTCTTGACAAAGAAATTATCAATCTCTTGACAAGCAGATAA | 2412 | 0.4117 | MHFANLDDTPMFRQQMQCLEESAESLRVRCCKFYKGCRKYTEGLGEAYDGDIAFASAIESFGGGQNDPHFIALGGPVLTKFTLALREISTYKELLRLQVDYIFNHRLQPIVNVDIHEVKEARKRFDKSSLVYDQAREKFMSLRKSTKIDIATVIEEELQEARASFEEARFNLVSTLNNVEVKKRFEFLEAVTGIMDAHFRYFQQGYQLLHQMEPFINEIMDYVHQSRENFNNEQIQLYQRMQDYKKQAYEESRLSLSGPYGSPLGDSAHPFSRISNEAADVVMESAANGKVQIIRQGHLSKRSSNLRADWKRRYFVLDSRGMLYYYRKPWNGSYGSNQPSPKKNSGIENGSGILSRWLSSHYHGGVHDERSIARHTVNLLTSTIKIDADQSDLRFCFRIISPTKNYTLQAENAVDQMDWMQKINGVIATLLTVQTLGTPPSADSENDDSNSDDNIDKSESYPDDDHALKAKSALDKPTRNKHLRSSRSMHLHTHTMRTEKPIDVLRSVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDSSVLSMLKSLGNLFANSVWEELLHSQGNLQTVDTLASSSKENEEEIFHARKPKHDDPILVKERFIHAKYSEKIFIPRITESHPIHSLAQKLQESICANDKKAVYQLIVKLNVDVNTIGCQALSGDTLDMASSNLNIASQSENQVVEDVKDGSSALHLACLNSDNGMVELLLQLGADINASDSRGRTPLHCCIIGGKTAAAKVLISRGANTYVADKEGNTPIKLATESQTLDKEIINLLTSR | 803 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun3g00689 | 803 | Gene3D | Arf GTPase activating protein | 479 | 643 | IPR038508 | - | |
Viun3g00689 | 803 | ProSiteProfiles | Ankyrin repeat region circular profile. | 745 | 777 | - | - | |
Viun3g00689 | 803 | ProSiteProfiles | Ankyrin repeat profile. | 745 | 777 | IPR002110 | GO:0005515 | |
Viun3g00689 | 803 | CDD | BAR_SFC_plant | 15 | 215 | IPR035670 | - | |
Viun3g00689 | 803 | SUPERFAMILY | Ankyrin repeat | 657 | 802 | IPR036770 | - | |
Viun3g00689 | 803 | CDD | ArfGap | 502 | 631 | - | - | |
Viun3g00689 | 803 | SMART | PH_update | 293 | 430 | IPR001849 | - | |
Viun3g00689 | 803 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 498 | 638 | IPR037278 | - | |
Viun3g00689 | 803 | SUPERFAMILY | BAR/IMD domain-like | 6 | 315 | IPR027267 | - | |
Viun3g00689 | 803 | Gene3D | Arfaptin homology (AH) domain/BAR domain | 4 | 250 | IPR027267 | - | |
Viun3g00689 | 803 | SMART | arf_gap_3 | 499 | 644 | IPR001164 | GO:0005096 | |
Viun3g00689 | 803 | Pfam | Ankyrin repeats (many copies) | 714 | 766 | IPR002110 | GO:0005515 | |
Viun3g00689 | 803 | ProSiteProfiles | Ankyrin repeat region circular profile. | 712 | 743 | - | - | |
Viun3g00689 | 803 | MobiDBLite | consensus disorder prediction | 451 | 482 | - | - | |
Viun3g00689 | 803 | ProSiteProfiles | PH domain profile. | 292 | 428 | IPR001849 | - | |
Viun3g00689 | 803 | PRINTS | HIV Rev interacting protein signature | 511 | 530 | IPR001164 | GO:0005096 | |
Viun3g00689 | 803 | PRINTS | HIV Rev interacting protein signature | 530 | 547 | IPR001164 | GO:0005096 | |
Viun3g00689 | 803 | PRINTS | HIV Rev interacting protein signature | 553 | 574 | IPR001164 | GO:0005096 | |
Viun3g00689 | 803 | SMART | ANK_2a | 712 | 741 | IPR002110 | GO:0005515 | |
Viun3g00689 | 803 | SMART | ANK_2a | 745 | 774 | IPR002110 | GO:0005515 | |
Viun3g00689 | 803 | MobiDBLite | consensus disorder prediction | 437 | 493 | - | - | |
Viun3g00689 | 803 | Pfam | PH domain | 294 | 427 | IPR001849 | - | |
Viun3g00689 | 803 | Coils | Coil | 227 | 247 | - | - | |
Viun3g00689 | 803 | Pfam | BAR domain of APPL family | 6 | 234 | IPR004148 | GO:0005515|GO:0005737 | |
Viun3g00689 | 803 | CDD | PH_ACAP | 295 | 432 | - | - | |
Viun3g00689 | 803 | SUPERFAMILY | PH domain-like | 203 | 428 | - | - | |
Viun3g00689 | 803 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 499 | 644 | IPR001164 | GO:0005096 | |
Viun3g00689 | 803 | SMART | 5bar | 5 | 218 | IPR004148 | GO:0005515|GO:0005737 | |
Viun3g00689 | 803 | Gene3D | - | 285 | 436 | IPR011993 | - | |
Viun3g00689 | 803 | ProSiteProfiles | Ankyrin repeat profile. | 712 | 744 | IPR002110 | GO:0005515 | |
Viun3g00689 | 803 | PANTHER | CENTAURIN/ARF | 5 | 801 | IPR045258 | GO:0005096 | |
Viun3g00689 | 803 | FunFam | ADP-ribosylation factor GTPase-activating protein AGD1 | 481 | 645 | - | - | |
Viun3g00689 | 803 | Gene3D | - | 650 | 803 | IPR036770 | - | |
Viun3g00689 | 803 | Pfam | Putative GTPase activating protein for Arf | 502 | 636 | IPR001164 | GO:0005096 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun3g00689 | Viun-Chr3 | 4247744 | 4275764 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun3g00689 | 505 | 637 | C2H2 Transcription Factor Family | AT4G21160 | 41.045 | 4.77e-20 | 90.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun3g00689 | K12489 | - | gmx:100792517 | 1269.99 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Viun3g00689 | 3 | 4247744 | 4275764 | Viun3g00689 | 3 | 4247744 | 4275764 | ECH | |
Viun3g00689 | 3 | 4247744 | 4275764 | Viun9g01583 | 9 | 23252582 | 23258504 | PCT |