Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00688 ATGGCGTCGTCGGAGGTATCGATCAAGGGAAATTCGGTGAACGGTAAAGGAGAGAACAGTTCCGGTGGCTTCAACGGTGGCAACGATGTTAGGAACGCTGCAGGAGAGCTTCAGAATGCTTCTTCCTCACCATCCGCCAGAGACGCAGAAACAGCGCTTTACCGGGAGCTATGGCACGCGTGCGCGGGTCCGCTGGTGACGGTGCCTAGAGAAGGAGAGCGCGTGTTCTATTTTCCTCAAGGACATATTGAGCAGGTGGAAGCGTCGACAAATCAGGTAGCGGAACAGCATATGCCGGTTTACGATCTACCACCGAAGATCCTTTGTCGGGTCATCAACGTCATGCTCAAGGCGGAGCCAGACACAGACGAGGTGTTTGCTCAAGTAACCTTACTTCCCGAGCCAAATCAAGACGAGAATGCGGTGGAGAAGGAGGGTCCCCCGGCACCGCCTCCTCGGTTTCACGTCCATTCGTTTTGTAAAACGCTTACGGCTTCTGATACGAGTACACACGGTGGATTTTCGGTGTTGAGACGACATGCTGATGAATGCCTTCCCCCGCTGGACATGTCAAAGCAGCCACCTACCCAGGAGTTGGTGGCCAAGGATCTGCACGGGAACGAGTGGCGATTCAGGCATATTTTTCGGGGTCAACCGCGTAGACACTTGCTTCAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTGGTTGCTGGGGATGCGTTTATATTTCTAAGGGGTGAGAATGGGGAACTTCGCGTTGGTGTTAGGCGTGCAATGAGGCAGCAGGGTAACGTTCCGTCCTCGGTTATCTCGAGCCACAGTATGCATCTTGGTGTTCTTGCAACTGCTTGGCATGCCATATTGACTGGAACCATGTTTACCGTGTATTACAAACCTAGGACTAGTCCAGCGGAATTTATAGTTCCTTATGATCAATACATGGAGTCCCTAAAAAATAATTACACCATCGGGATGCGCTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCCGAGCAAAGATTTACCGGTACCATTGTGGGAATTGAAGATGCTGATCCAAAAAGGTGGCCTAACTCCAAATGGAGAAGTCTTAAGGTGAGGTGGGATGAAACTTCTAACGTACGTCGTCCCGAGAGAGTTTCCCAATGGAAAATAGAGCCCGCTCTCGCTCCTCCTGCTCTTAATCCTTTACCAATGCCCAGGCCTAAAAGGCCTCGATCTAATGTGGTTCCATCATCCCCTGATTCCTCTGTTCTTACCCGTGAAGCATCATCCAAAGTGAGTGTAGACCCTTTGCCAGCAAGTGGATTTCAAAGGGTCTTGCAAGGTCAAGAATTATCGACCTTGAGAGTAAATTTTGCCGAAAGCAACGAATCTGATACGGCAGAGAAGTCTGCATGGTCATCTGCTGCAGACGATGAAAAGATTGATGTTGTTTCCACCTCTAGAAGGTATGGATCAGAGAGCTGGATGTCAATGGGAAGGCATGAACCAACATATCCAGATCTGCTTTCTGGCTTTGGGGTTCATGGAGATCAGGCTTCCCATCCATCATTGGTTGATCAAAATGGTCCTGTAGCTAACCTTAGTAGAAAACATTTTTTCGACCGCGAAGGCAAACATAATATTCTCAGTCCATGGCCTGTAGTGCCATCTAGTCTATCACTCAATCTCTTGGACTCTAATACAAAAGGCTCTGCTCATGTTGGTGATACAACTTCTCAAGTTCGAGGGAGATTTGGCAGTGCATTTGGTGACTATACTGTGCTTCATGGACACAAAGTTGATCATTCACATGGAAACTTTTTGATGCCACCACCACTGTCAACTCAATATGAGAGTCCTCGTTCTAGAGAACTGTTACCCAAACCAATATCAGGAAAACCTTCCGAGGTATCAAAACCGAAGGACAGTGACTGTAAGTTATTTGGCATCTCACTTCTTAGTAGCCCCATTGCTCTGGACCCTTCTGTGTCACAAAGGAATGTTGCAATCGAGCCACTTGGTCACATGCATACTACACATCAACACCGCACATATGACAATGACCCGAAGTCTGAGAATTCAAGGGGATTGAAACCGGCTGATGGTGTGCTGATTGACGACCATGAAAAGCCTACGCAAACTTCTCAGCCACATCTGAAAGATGTTCAACCCAAATCTAATAGTGGTTCTGCCAGAAGTTGCACTAAAGTTCACAAGAAAGGGATTGCACTTGGTAGGTCGGTGGACCTCACAAAATTCAGTGCATATGATGAATTAATTGCTGAATTGGATGAATTATTTGAATTCGGAGGTGAATTAACCTCTCCTCAAAAAGATTGGCTTATTGTCTACACTGATAATGAGGGCGATATGATGCTTGTTGGTGATGATCCGTGGCAGGAATTTGTTGCTATGGTGCGAAAAATTTATATCTATCCCAAAGAGGAGATTCAGAAAATGAGCCCGGGTACCTTAAGTTCAAAGAACGAAGACAATCAATCGGGTAGTGAAGGTGCAGACGGTCAACAAGAAAATAAATGTCAGCTGAATCATTCAGCTTCGGAGGCCTGA 2562 0.4707 MASSEVSIKGNSVNGKGENSSGGFNGGNDVRNAAGELQNASSSPSARDAETALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPKRWPNSKWRSLKVRWDETSNVRRPERVSQWKIEPALAPPALNPLPMPRPKRPRSNVVPSSPDSSVLTREASSKVSVDPLPASGFQRVLQGQELSTLRVNFAESNESDTAEKSAWSSAADDEKIDVVSTSRRYGSESWMSMGRHEPTYPDLLSGFGVHGDQASHPSLVDQNGPVANLSRKHFFDREGKHNILSPWPVVPSSLSLNLLDSNTKGSAHVGDTTSQVRGRFGSAFGDYTVLHGHKVDHSHGNFLMPPPLSTQYESPRSRELLPKPISGKPSEVSKPKDSDCKLFGISLLSSPIALDPSVSQRNVAIEPLGHMHTTHQHRTYDNDPKSENSRGLKPADGVLIDDHEKPTQTSQPHLKDVQPKSNSGSARSCTKVHKKGIALGRSVDLTKFSAYDELIAELDELFEFGGELTSPQKDWLIVYTDNEGDMMLVGDDPWQEFVAMVRKIYIYPKEEIQKMSPGTLSSKNEDNQSGSEGADGQQENKCQLNHSASEA 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00688 853 MobiDBLite consensus disorder prediction 817 853 - -
Viun3g00688 853 FunFam Auxin response factor 724 818 - -
Viun3g00688 853 Pfam AUX/IAA family 775 817 IPR033389 -
Viun3g00688 853 ProSiteProfiles PB1 domain profile. 729 811 IPR000270 GO:0005515
Viun3g00688 853 Gene3D - 322 392 - -
Viun3g00688 853 MobiDBLite consensus disorder prediction 673 733 - -
Viun3g00688 853 ProSiteProfiles B3 DNA-binding domain profile. 159 261 IPR003340 GO:0003677
Viun3g00688 853 Pfam B3 DNA binding domain 159 260 IPR003340 GO:0003677
Viun3g00688 853 MobiDBLite consensus disorder prediction 411 426 - -
Viun3g00688 853 CDD B3_DNA 157 259 IPR003340 GO:0003677
Viun3g00688 853 FunFam Auxin response factor 322 394 - -
Viun3g00688 853 Gene3D - 156 261 IPR015300 -
Viun3g00688 853 SUPERFAMILY DNA-binding pseudobarrel domain 155 288 IPR015300 -
Viun3g00688 853 MobiDBLite consensus disorder prediction 673 712 - -
Viun3g00688 853 Gene3D - 725 818 - -
Viun3g00688 853 FunFam Auxin response factor 157 261 - -
Viun3g00688 853 Pfam Auxin response factor 285 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun3g00688 853 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 818 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun3g00688 853 MobiDBLite consensus disorder prediction 603 639 - -
Viun3g00688 853 MobiDBLite consensus disorder prediction 713 731 - -
Viun3g00688 853 SUPERFAMILY CAD & PB1 domains 730 806 - -
Viun3g00688 853 MobiDBLite consensus disorder prediction 393 409 - -
Viun3g00688 853 MobiDBLite consensus disorder prediction 1 45 - -
Viun3g00688 853 MobiDBLite consensus disorder prediction 393 433 - -
Viun3g00688 853 SMART B3_2 159 261 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00688 Viun-Chr3 4222532 4227357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00688 1 839 B3 DNA Binding Superfamily AT5G62000 64.699 0.0 1089
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun3g00688 AUX_IAA 1.5e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00688 - - gmx:100815956 1456.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00688 3 4222532 4227357 Viun9g01580 9 23054910 23059924 PCT