Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00687 ATGATGTCTGGTTGGATGCAAGACACAGAAGAACAAAACTCTGCTTCATGGTCAAACCCAAACGCCAACGAGTTAAGCTGCTTCTCACTGTGTGCCTACAAACCCATCTCCGACATCCATCAAGAATGGCACGTGCCAAACAACGCCACCCACAACCACTCACATATTACAGACATGGCTTTCTCCACCAACTTCGCTCAACACCAACCATTACACACTTTCTCTTCTTCCACTACCATTGACGTAGCTCAAGGGCACAACTTTCTCACCCCCAAACCCTACTTTTACCCGTTCGAGCATGCCTCTCGCGCGGCTTCCGATGTGGGATTTCTTGACCCTCAAGCTTTGAACAAGGTTCATCACGGTGGTGTCTTCTTCAGCTCAAATGGTAATAACCAGTTGGCCCTTCCAAATTTAGCAATGCCTCCCCAACAAGATGGTGTTGGATTTTCGGGATTCAAGAATATTGGAGACTCTGATAATGTCGAGGGTTCGAAGGCCTTGTTTCTGAGCACGTCCAACATACTGAAACCCCTTGAATCGTTCCCTCCGTCGGGTGTACAACCAACACTTTTTCAGAAGCGAGCAGCACTCAGGAAAAGCATGGAAGATAACTGCAGAGGCAAGAGTAAAGGGAATAGCGATGGTAGCAAGAGGAAGATGTGTAATAATGGAGAAGGTGTTGAAGGGTCCGGGTTGAACTTTGATTCTGATGAGAGTGGTGAGGTGGAAGAGAGTGGAAGGAACGGCGGAAACAGCTCGAATGCGAACAGCACCGTCACCGGTGGCGTGGATGAAAAGGGCAAGAAGAAGACAGGTATACCTGCGAAGAATTTGATGGCTGAACGCCGCCGGAGGAAGAAGCTCAATGACAGACTCTATATGCTGAGATCAGTTGTTCCCAATATCAGCAAAATGGACAGAGCTTCAATACTGGGGGATGCTGTGGAGTATTTGAAGGAACTTCTGCAAAGGATTGGTGATCTTCACAATGAATTGGAGTCAACAACAACAACACCAGCTTCTTCTTCATTGACTTCGAGCTTTCTTCATCCATTGACACCCAAATTAGCAACACGTATGCAAGAAGAACTTTGTCTCAGTTCATTACCAAGCCCTAATGGCCAACCTGTGACGGTTGAGGTTGGGTTGAGTGAAGGAGGTGTAAAGATTCAGATGTGTTGTGAGAGGAAACCTGGTCTCTTGCTGTCTACCATGAGGGCTCTCGACAACCTCGGCATAGACATCCACCAAGCAGTCATCACCTATTTCAATGGATTTGCCATGGATATTCTCCGAGCTCAGCTATGTAACGAAGGTGGTCAAGATGTGCATCCAGAGCAAATCAAAGCAGTTCTATTAGATTCAGCTGGCTTCCATGGCATGATCTAG 1392 0.4713 MMSGWMQDTEEQNSASWSNPNANELSCFSLCAYKPISDIHQEWHVPNNATHNHSHITDMAFSTNFAQHQPLHTFSSSTTIDVAQGHNFLTPKPYFYPFEHASRAASDVGFLDPQALNKVHHGGVFFSSNGNNQLALPNLAMPPQQDGVGFSGFKNIGDSDNVEGSKALFLSTSNILKPLESFPPSGVQPTLFQKRAALRKSMEDNCRGKSKGNSDGSKRKMCNNGEGVEGSGLNFDSDESGEVEESGRNGGNSSNANSTVTGGVDEKGKKKTGIPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAVEYLKELLQRIGDLHNELESTTTTPASSSLTSSFLHPLTPKLATRMQEELCLSSLPSPNGQPVTVEVGLSEGGVKIQMCCERKPGLLLSTMRALDNLGIDIHQAVITYFNGFAMDILRAQLCNEGGQDVHPEQIKAVLLDSAGFHGMI 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00687 463 MobiDBLite consensus disorder prediction 246 262 - -
Viun3g00687 463 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 133 459 - -
Viun3g00687 463 Coils Coil 319 339 - -
Viun3g00687 463 MobiDBLite consensus disorder prediction 264 285 - -
Viun3g00687 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 273 322 IPR011598 GO:0046983
Viun3g00687 463 FunFam BHLH transcription factor 268 337 - -
Viun3g00687 463 CDD ACT_UUR-ACR-like 391 452 - -
Viun3g00687 463 MobiDBLite consensus disorder prediction 200 216 - -
Viun3g00687 463 SUPERFAMILY ACT-like 387 462 IPR045865 -
Viun3g00687 463 MobiDBLite consensus disorder prediction 200 285 - -
Viun3g00687 463 SMART finulus 279 328 IPR011598 GO:0046983
Viun3g00687 463 CDD bHLH_AtAMS_like 276 334 - -
Viun3g00687 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 277 342 IPR036638 GO:0046983
Viun3g00687 463 Gene3D - 266 338 IPR036638 GO:0046983
Viun3g00687 463 Pfam Helix-loop-helix DNA-binding domain 280 322 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00687 Viun-Chr3 4218362 4222706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00687 173 436 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 60.440 1.38e-88 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g00687 HLH 9.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00687 - - var:108344591 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00687 3 4218362 4222706 Viun9g01578 9 23051640 23054291 PCT