LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g00679	ATGTCGTCTAATTCTTGCGTTATAGAACCATTGGAGGTTGTGGAGGATCCAAAACTGGAGCTGCAACCTGATCAGACAGAAATTAGATTGTGGGAGAGGCTTGGGAAGGCTGCAATGTTGGACATTGAGTCGAGCACTTTTTCTTGGGACATGCTCTCTTCACTGCACCACACTGAACACGGTAGTAGCAATGAACAATCCGAAGATGAGATGAACAAAGCTCTCGAGGTAACTGTAAATTCTGGAGGAGTTGTCTTCTTTGCCTTTTTCAATCTCCCTGGGAATGCTGATATTTGTCCAAAAGAAGCTGCAGCAGTTATAAAGATATCACCATCAAGAATGGCAACACAGTCTGAACGCCTTGGCTACGAATTTGCCAAGTGGTTGGGAGTCCAAACTCCACAGGGTAGAGTCATTCACAATACCAGTCTTGAATGGCAACAAATAAAGGAAGCTGGAGAAAGAGCTAGAGAAGCAGCAAATTCTGAGGGTGATGAAATTGGCGAGGTGACATGTTTTGAACTTTTGGAAGCACTCGAGCTAAGCCGGTGTCTCTTCTTTATGAGTTATGTACACGGTTCACCATTGCTTGAAAGCTCTACTGCATTCAACTCAAAGGAATCTGCAGAAAGAACATCAGAAGGTCTTGGGAGGGTGCTGATGCTGGACCTTGTGATCAGAAATGAAGATAGGTTGCCTTGCCGTGAGCTTAGATGGCGTGGAAATCCAGCGAATTTGTTGTTGGCTGGAAAGACTATATGTGCAAATACAGATATGCTAGAAGCCGCTGTTGATTCTGCAATTGACCGATATAGACCAAAGATGATATCGGCTTTTCAGAAAGAAAGAAGGTCAACTTCAGTAGATTGCAGACTCGATTCTCACGATCCTGGTTTCATATCACATTCCCCTGATCTTTCAGATATCTCAGAATCTCCAATATCTCCTCACATCAAACTTGTAACTCAAACATCCGAAGAATCACTCTCTCCAGACATCAACATAGTAGCCATTGATTCTGGTGTTCCTCGGCGACCACCTGCTGGAAAACGTGCAAATGATCAGGTGAATTACCCCAAGTTGATTGAGTTGTTACTCAACAGTTCTGAATTTGCCTCAAACCTGATATTTGATGTAACTGGAGGGAAACTAGGATGTCCTCCATCAGAAGACACGGACAAAACTGATGTATCTACGAACGACGTAATGTTTGTTGTTCATGCGTTCCGCGCTGGTTTCCGCGCTGCTCTCAGGGATCTGCAGGGATTTCACATATTCCTACTCACACTTCACCAAAGACTTGATACTTTGTTACGATCATTTATGAACATTATGAGCAAAATATCTTTGGGAGAATTTGACAAAGAAGATGCTGTAGTTCCTGACTCACCTTCAGTAGCAGTTGGTGGGCAATTTTGCTCGCCATCATGTAAAGAGAGGGTTGGTAATGACAACCATCATGATTTGGTTGATTCGGAATCACAGAAAACTGCTTCAAAGGCATCACCTTCAGGAAACAGAGATTGCACTGACTTTACTCCTACCCCAAAAGAATCTTGCCATGGAAAGTTCTATAAAGGAAATGGGGAACCACTACGTAGTCTCCGTTTGACTACTAAGCTCCGTGACTTCCATAAATTTGCCAAGGTTGATGCTGAATCCAGTAGAGAATTGGAACAATGGAATGAAATGCTTAAAAGCGATGCCATCAAACTATGCCAGGATAACAATTTCAATCCAGGATTTTTTGAGGGTAGTGATAATAACTGTGTTGTTGACGCATATGAACTTAAGATAAGACTTGAGCATATTCTTGAGAGAATTGCATTGATATCAGATGCTGCAAGTACTGAGAAACCTTCAGCAGTGACAAGTAGTCTGTTCATTGGTGGAGCATTGGCTGCAAGATCTGTTTACACACTACAATACTTGGGAATCACAAATATTTTGTGTTTGTGTACCAATGAAATTGGACAGTCAGAAACTCAGTATCCTGATCTATTTGAGTATAAGAATTTCTCTGTATGTGACAGTGATGATTACAACATCAGCGGCATATTTGAAGAAGCATGTGATTTGATAGATCATGTTGAAGAAAGAGGTCAAAAAGTTTTAGTTCACTGCTTTGAGGGGAAAAGCCGAAGTGTAACATTGGTCCTGGCATACTTAATGCTCAGGAAGAAGAATACTTTATCAGAAGCATGGCAAGCTTTGAAGCGAGTTCACTGTCGAGCACAACCCAATGACGGTTTTGCAAAGATCTTATTGGACTTGGATCAGAAACTACATGGAAAGGTTTCGATGGAATGGCATCAGCGAAAACCATTGATGAAAATTTGCCCAATATGTGGGAAGAATGCTGGACTAAGCAGTAGCTCACTTAAGCTCCATCTGCAGAAATCACACAGAAAGCTGTCCTCTGGGAGTGTAGATAGCGCCATGACCATGGAAATCGAGAAAGCTTTGACAGCTTTGAAGATTAACCGTGGAGGGAGTGTCAGCCCCACACAAAGACAATCTCATCCAATAATAGATCAATAG	2541	0.4215	MSSNSCVIEPLEVVEDPKLELQPDQTEIRLWERLGKAAMLDIESSTFSWDMLSSLHHTEHGSSNEQSEDEMNKALEVTVNSGGVVFFAFFNLPGNADICPKEAAAVIKISPSRMATQSERLGYEFAKWLGVQTPQGRVIHNTSLEWQQIKEAGERAREAANSEGDEIGEVTCFELLEALELSRCLFFMSYVHGSPLLESSTAFNSKESAERTSEGLGRVLMLDLVIRNEDRLPCRELRWRGNPANLLLAGKTICANTDMLEAAVDSAIDRYRPKMISAFQKERRSTSVDCRLDSHDPGFISHSPDLSDISESPISPHIKLVTQTSEESLSPDINIVAIDSGVPRRPPAGKRANDQVNYPKLIELLLNSSEFASNLIFDVTGGKLGCPPSEDTDKTDVSTNDVMFVVHAFRAGFRAALRDLQGFHIFLLTLHQRLDTLLRSFMNIMSKISLGEFDKEDAVVPDSPSVAVGGQFCSPSCKERVGNDNHHDLVDSESQKTASKASPSGNRDCTDFTPTPKESCHGKFYKGNGEPLRSLRLTTKLRDFHKFAKVDAESSRELEQWNEMLKSDAIKLCQDNNFNPGFFEGSDNNCVVDAYELKIRLEHILERIALISDAASTEKPSAVTSSLFIGGALAARSVYTLQYLGITNILCLCTNEIGQSETQYPDLFEYKNFSVCDSDDYNISGIFEEACDLIDHVEERGQKVLVHCFEGKSRSVTLVLAYLMLRKKNTLSEAWQALKRVHCRAQPNDGFAKILLDLDQKLHGKVSMEWHQRKPLMKICPICGKNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIEKALTALKINRGGSVSPTQRQSHPIIDQ	846

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g00679	846	FunFam	Dual specificity protein phosphatase PHS1	591	765	-	-
	Viun3g00679	846	SUPERFAMILY	Protein kinase-like (PK-like)	24	355	IPR011009	-
	Viun3g00679	846	MobiDBLite	consensus disorder prediction	495	513	-	-
	Viun3g00679	846	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	619	764	IPR020422	GO:0006470\|GO:0008138
	Viun3g00679	846	MobiDBLite	consensus disorder prediction	484	514	-	-
	Viun3g00679	846	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	619	764	IPR029021	-
	Viun3g00679	846	Gene3D	Protein tyrosine phosphatase superfamily	602	774	IPR029021	-
	Viun3g00679	846	Pfam	Actin-fragmin kinase, catalytic	27	284	IPR015275	-
	Viun3g00679	846	SMART	dsp_5	619	761	IPR020422	GO:0006470\|GO:0008138
	Viun3g00679	846	PANTHER	DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1	20	845	IPR035010	GO:0004721\|GO:0009737\|GO:0043622
	Viun3g00679	846	Pfam	Dual specificity phosphatase, catalytic domain	640	759	IPR000340	GO:0008138\|GO:0016311
	Viun3g00679	846	CDD	DSP	620	757	-	-
	Viun3g00679	846	Gene3D	-	194	296	IPR036940	-
	Viun3g00679	846	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	688	740	IPR000387	GO:0016311\|GO:0016791

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g00679	Viun-Chr3	4160163	4164616	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g00679	16	842	Protein tyrosine phosphatase (PTP) family	AT5G23720	62.724	0.0	1011

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g00679	K14165		-	gmx:100791993	1441.02