Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00678 ATGCAGGCTTTGTATATGTTGGGAGATATCACTGCAGGGCCTGCGTTTAAGTTCACGCAATGGCTCCAATTGGTTCGTAAGCGAACTGCAAAACATCGTCCTTCTGGCTTCCCTCACCGCAATTCAATCAGAATGTCGTCTAATTCTTGCGTTATAGAACCATTGGAGGTTGTGGAGGATCCAAAACTGGAGCTGCAACCTGATCAGACAGAAATTAGATTGTGGGAGAGGCTTGGGAAGGCTGCAATGTTGGACATTGAGTCGAGCACTTTTTCTTGGGACATGCTCTCTTCACTGCACCACACTGAACACGGTAGTAGCAATGAACAATCCGAAGATGAGATGAACAAAGCTCTCGAGGTAACTGTAAATTCTGGAGGAGTTGTCTTCTTTGCCTTTTTCAATCTCCCTGGGAATGCTGATATTTGTCCAAAAGAAGCTGCAGCAGTTATAAAGATATCACCATCAAGAATGGCAACACAGTCTGAACGCCTTGGCTACGAATTTGCCAAGTGGTTGGGAGTCCAAACTCCACAGGGTAGAGTCATTCACAATACCAGTCTTGAATGGCAACAAATAAAGGAAGCTGGAGAAAGAGCTAGAGAAGCAGCAAATTCTGAGGGTGATGAAATTGGCGAGGTGACATGTTTTGAACTTTTGGAAGCACTCGAGCTAAGCCGGTGTCTCTTCTTTATGAGTTATGTACACGGTTCACCATTGCTTGAAAGCTCTACTGCATTCAACTCAAAGGAATCTGCAGAAAGAACATCAGAAGGTCTTGGGAGGGTGCTGATGCTGGACCTTGTGATCAGAAATGAAGATAGGTTGCCTTGCCGTGAGCTTAGATGGCGTGGAAATCCAGCGAATTTGTTGTTGGCTGGAAAGACTATATGTGCAAATACAGATATGCTAGAAGCCGCTGTTGATTCTGCAATTGACCGATATAGACCAAAGATGATATCGGCTTTTCAGAAAGAAAGAAGGTCAACTTCAGTAGATTGCAGACTCGATTCTCACGATCCTGGTTTCATATCACATTCCCCTGATCTTTCAGATATCTCAGAATCTCCAATATCTCCTCACATCAAACTTGTAACTCAAACATCCGAAGAATCACTCTCTCCAGACATCAACATAGTAGCCATTGATTCTGGTGTTCCTCGGCGACCACCTGCTGGAAAACGTGCAAATGATCAGGTGAATTACCCCAAGTTGATTGAGTTGTTACTCAACAGTTCTGAATTTGCCTCAAACCTGATATTTGATGTAACTGGAGGGAAACTAGGATGTCCTCCATCAGAAGACACGGACAAAACTGATGTATCTACGAACGACGTAATGTTTGTTGTTCATGCGTTCCGCGCTGGTTTCCGCGCTGCTCTCAGGGATCTGCAGGGATTTCACATATTCCTACTCACACTTCACCAAAGACTTGATACTTTGTTACGATCATTTATGAACATTATGAGCAAAATATCTTTGGGAGAATTTGACAAAGAAGATGCTGTAGTTCCTGACTCACCTTCAGTAGCAGTTGGTGGGCAATTTTGCTCGCCATCATGTAAAGAGAGGGTTGGTAATGACAACCATCATGATTTGGTTGATTCGGAATCACAGAAAACTGCTTCAAAGGCATCACCTTCAGGAAACAGAGATTGCACTGACTTTACTCCTACCCCAAAAGAATCTTGCCATGGAAAGTTCTATAAAGGAAATGGGGAACCACTACGTAGTCTCCGTTTGACTACTAAGCTCCGTGACTTCCATAAATTTGCCAAGGTTGATGCTGAATCCAGTAGAGAATTGGAACAATGGAATGAAATGCTTAAAAGCGATGCCATCAAACTATGCCAGGATAACAATTTCAATCCAGGATTTTTTGAGGGTAGTGATAATAACTGTGTTGTTGACGCATATGAACTTAAGATAAGACTTGAGCATATTCTTGAGAGAATTGCATTGATATCAGATGCTGCAAGTACTGAGAAACCTTCAGCAGTGACAAGTAGTCTGTTCATTGGTGGAGCATTGGCTGCAAGATCTGTTTACACACTACAATACTTGGGAATCACAAATATTTTGTGTTTGTGTACCAATGAAATTGGACAGTCAGAAACTCAGTATCCTGATCTATTTGAGTATAAGAATTTCTCTGTATGTGACAGTGATGATTACAACATCAGCGGCATATTTGAAGAAGCATGTGATTTGATAGATCATGTTGAAGAAAGAGGTCAAAAAGTTTTAGTTCACTGCTTTGAGGGGAAAAGCCGAAGTGTAACATTGGTCCTGGCATACTTAATGCTCAGGAAGAAGAATACTTTATCAGAAGCATGGCAAGCTTTGAAGCGAGTTCACTGTCGAGCACAACCCAATGACGGTTTTGCAAAGATCTTATTGGACTTGGATCAGAAACTACATGGAAAGGTTTCGATGGAATGGCATCAGCGAAAACCATTGATGAAAATTTGCCCAATATGTGGGAAGAATGCTGGACTAAGCAGTAGCTCACTTAAGCTCCATCTGCAGAAATCACACAGAAAGCTGTCCTCTGGGAGTGTAGATAGCGCCATGACCATGGAAATCGAGAAAGCTTTGACAGCTTTGAAGATTAACCGTGGAGGGAGTGTCAGCCCCACACAAAGACAATCTCATCCAATAATAGATCAATAG 2673 0.4242 MQALYMLGDITAGPAFKFTQWLQLVRKRTAKHRPSGFPHRNSIRMSSNSCVIEPLEVVEDPKLELQPDQTEIRLWERLGKAAMLDIESSTFSWDMLSSLHHTEHGSSNEQSEDEMNKALEVTVNSGGVVFFAFFNLPGNADICPKEAAAVIKISPSRMATQSERLGYEFAKWLGVQTPQGRVIHNTSLEWQQIKEAGERAREAANSEGDEIGEVTCFELLEALELSRCLFFMSYVHGSPLLESSTAFNSKESAERTSEGLGRVLMLDLVIRNEDRLPCRELRWRGNPANLLLAGKTICANTDMLEAAVDSAIDRYRPKMISAFQKERRSTSVDCRLDSHDPGFISHSPDLSDISESPISPHIKLVTQTSEESLSPDINIVAIDSGVPRRPPAGKRANDQVNYPKLIELLLNSSEFASNLIFDVTGGKLGCPPSEDTDKTDVSTNDVMFVVHAFRAGFRAALRDLQGFHIFLLTLHQRLDTLLRSFMNIMSKISLGEFDKEDAVVPDSPSVAVGGQFCSPSCKERVGNDNHHDLVDSESQKTASKASPSGNRDCTDFTPTPKESCHGKFYKGNGEPLRSLRLTTKLRDFHKFAKVDAESSRELEQWNEMLKSDAIKLCQDNNFNPGFFEGSDNNCVVDAYELKIRLEHILERIALISDAASTEKPSAVTSSLFIGGALAARSVYTLQYLGITNILCLCTNEIGQSETQYPDLFEYKNFSVCDSDDYNISGIFEEACDLIDHVEERGQKVLVHCFEGKSRSVTLVLAYLMLRKKNTLSEAWQALKRVHCRAQPNDGFAKILLDLDQKLHGKVSMEWHQRKPLMKICPICGKNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIEKALTALKINRGGSVSPTQRQSHPIIDQ 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00678 890 Gene3D Protein tyrosine phosphatase superfamily 646 818 IPR029021 -
Viun3g00678 890 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 2 889 IPR035010 GO:0004721|GO:0009737|GO:0043622
Viun3g00678 890 Pfam Dual specificity phosphatase, catalytic domain 684 803 IPR000340 GO:0008138|GO:0016311
Viun3g00678 890 Pfam Actin-fragmin kinase, catalytic 71 328 IPR015275 -
Viun3g00678 890 SUPERFAMILY Protein kinase-like (PK-like) 20 399 IPR011009 -
Viun3g00678 890 MobiDBLite consensus disorder prediction 539 557 - -
Viun3g00678 890 Gene3D - 238 340 IPR036940 -
Viun3g00678 890 MobiDBLite consensus disorder prediction 528 558 - -
Viun3g00678 890 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 732 784 IPR000387 GO:0016311|GO:0016791
Viun3g00678 890 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 663 808 IPR029021 -
Viun3g00678 890 CDD DSP 664 801 - -
Viun3g00678 890 ProSiteProfiles Dual specificity protein phosphatase domain profile. 663 808 IPR020422 GO:0006470|GO:0008138
Viun3g00678 890 FunFam Dual specificity protein phosphatase PHS1 635 809 - -
Viun3g00678 890 SMART dsp_5 663 805 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00678 Viun-Chr3 4160079 4164616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00678 2 886 Protein tyrosine phosphatase (PTP) family AT5G23720 61.899 0.0 1063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00678 K14165 - gmx:100791993 1513.43