Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00676 ATGAAGAACTTGCCAACATGGAAAACCATGGCAGTGACTGTGGTGTTGCTTCAATTGAGCTTTTCCTTGGAGATTTTCTGTCTCTCTAATCATGCAGATAGAATTGTTCGGCTTCCTGGACAACCCAACACACGCTTCCAACAGTTCTCAGGATATGTTACAGTGGATGATCTCAAACACAAAGCTCTCTTTTACTATTTTGTTGAATCAGAAACTCATCCATCTTCAAAGCCTCTTGTTCTCTGGCTCAATGGAGGACCTGGGTGTTCTTCTCTTGGAGTGGGTGCATTCTCTGAAAATGGACCTTTTAGACCAAATGGGAAAGTTTTGATTAAAAACGAGTACAGTTGGAACAGAGAGACAAACATTTTGTATTTGGAGACACCAGTTGGGGTGGGGTTCTCTTATGCTAAAGGTGGCTCTTCCTATGAGACTGTGAATGATGAGACAACAGCCAGGGACAATCTTGTATTCTTGCAACGCTGGTTCAACAAGTTCCCTCAATTCAGGCACAGAGATTTGTTTCTAGCAGGTGAAAGCTATGCAGGGCATTATGTTCCACAACTTGCAAAGCTCATGATTGAAATAAACAAAAAGGAGAAGTTATTCAATCTGAAAGGCATAGCCTTGGGTAATCCAGTTCTAGAATATGCCACTGACTTGAATTCAAGGGCCGAGTTCTTCTGGTCTCACGGTTTGATATCTGATTCAACGTACAAATTGTTCACTACAGGCTGTAACTATTCCCGATACGTCAGTGAATACTACAGAGACTCCATTTCTCCGCTTTGTTCAAAGGTTTTGAGGCAAGTAGCCAGAGAAACCAGTAAGTTTGTGGATAAATATGATGTCACGCTTGATGTTTGCATTTCATCAGTGCTTTCACAATCCAAAGCAATTTGTCCTCAAGGCCAAAAAACAAATGAGAGCATAGATGTATGTGTAGATGACAAAGTTACTAATTACTTGAACCGAAAAGATGTACAAGAGGCTCTCCATGCCAAGCTTGTCGGAGTCCAAAAATGGGATGTCTGCAACAACATTTTGGACTATGATATGCTCAACCTGGAGAAACCTACACTCCCTATTGTTGGATCACTCATAAAATCTGGAGTTCGGGTCTTAATTTACAGTGGAGATCAAGATTCAGTGATTCCACTGACTGGAAGCCGCACCTTAGTTCAAAAGCTGGCTAGACAACTAGGACTGAATACAACAGTCCCCTACAGAGTCTGGTTTGAAGGCCAGCAGGTTGGTGGATGGACTCAAGTTTATGGCAGTATTCTCTCATTTGCTACTGTGAGAGGTGCCTCTCATGAAGCCCCTTTCTCACAGCCTGAAAGATCTTTTGTTTTGTTCAAGTCATTCTTGGAAGATAGGCCTCTGCCTGAAATCTTCTGA 1401 0.4218 MKNLPTWKTMAVTVVLLQLSFSLEIFCLSNHADRIVRLPGQPNTRFQQFSGYVTVDDLKHKALFYYFVESETHPSSKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGKVLIKNEYSWNRETNILYLETPVGVGFSYAKGGSSYETVNDETTARDNLVFLQRWFNKFPQFRHRDLFLAGESYAGHYVPQLAKLMIEINKKEKLFNLKGIALGNPVLEYATDLNSRAEFFWSHGLISDSTYKLFTTGCNYSRYVSEYYRDSISPLCSKVLRQVARETSKFVDKYDVTLDVCISSVLSQSKAICPQGQKTNESIDVCVDDKVTNYLNRKDVQEALHAKLVGVQKWDVCNNILDYDMLNLEKPTLPIVGSLIKSGVRVLIYSGDQDSVIPLTGSRTLVQKLARQLGLNTTVPYRVWFEGQQVGGWTQVYGSILSFATVRGASHEAPFSQPERSFVLFKSFLEDRPLPEIF 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00676 466 ProSitePatterns Serine carboxypeptidases, histidine active site. 429 446 IPR033124 GO:0004185
Viun3g00676 466 FunFam Carboxypeptidase 360 459 - -
Viun3g00676 466 SUPERFAMILY alpha/beta-Hydrolases 37 463 IPR029058 -
Viun3g00676 466 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 446 IPR001563 GO:0004185|GO:0006508
Viun3g00676 466 Gene3D - 360 458 - -
Viun3g00676 466 Gene3D - 314 350 - -
Viun3g00676 466 Gene3D alpha/beta hydrolase 29 291 IPR029058 -
Viun3g00676 466 FunFam Carboxypeptidase 28 463 - -
Viun3g00676 466 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Viun3g00676 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 429 442 IPR001563 GO:0004185|GO:0006508
Viun3g00676 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Viun3g00676 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Viun3g00676 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Viun3g00676 466 Pfam Serine carboxypeptidase 40 458 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00676 Viun-Chr3 4152296 4157061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00676 322 462 Calmodulin-binding Proteins AT2G22960 29.078 1.41e-16 75.9