Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00671 ATGGCAGCTTTTTCATCCCAATACTACCATCCCTTTCTACTTCACTCAATCTCTTCTCTGGGGGACCAACACCAACAACAACCCCTTATAAACACCCCTTCTCCTTCTTTTCACAACCAAACATCTCTCAATACTCTCACTAATCAAGACTCTACCAGTGACATCAAAAACCATAGTCCTCAGACATCCATGGTTGTGGACAAGCTTGAAAACGGTGAACAGGTCACTCAGAAGGTCACCTCTCTGCACAAGAAGAGAAGACCAAAAAATGGACCTTCCTCGAACTCAGCAGAAGGAGCAAACAAGAAACAAAAGAACAGCAATGGCGGTGATCAAGGAGAAAACAAGGAAAAAGAAGTGAAGAAGGATCAGAAAAAGGGTTCAGAAGATCCTCCAACTGGGTATATCCACGTTAGAGCAAGAAGGGGTCAAGCAACAGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGACGTTGCAGCGACTTGTGCCAGGCTGTGATAAGGTAACTGGAAAGGCCCTTGTGTTGGACGAAATAATCAATTATGTTCAGTCCTTACAGAATCAAGTGGAGTTCTTGTCAATGAAACTTGCTTCTGTGAATCCCATGTTCTTTGACTTGGCAACGGACTTAGACAGCCTCTCGGTTAAACCTGATGAGAAGTTAAATAATGCAGCATCCCCATCACTACTAGCATGTGTGGAACAATGCAGACCAAACCAGGCCATTGCTTTTGCTGACACAACCACCCTGACCACCACTACTACCACCTTCCCCACCGCTAATAATGATGACTATCTTTTGGATTATTCATCCTCATCTTTTCTTCAACCCCACAGGCCAAATCTCTTCTTTGAGTATAACGGTGGTCAGATTTGGGAAGTAGACCAGCGACAAAAGTTTCTTCATCCATATGGATATGCCAATAATACTGGCTCTTTCAATTAA 972 0.4352 MAAFSSQYYHPFLLHSISSLGDQHQQQPLINTPSPSFHNQTSLNTLTNQDSTSDIKNHSPQTSMVVDKLENGEQVTQKVTSLHKKRRPKNGPSSNSAEGANKKQKNSNGGDQGENKEKEVKKDQKKGSEDPPTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMFFDLATDLDSLSVKPDEKLNNAASPSLLACVEQCRPNQAIAFADTTTLTTTTTTFPTANNDDYLLDYSSSSFLQPHRPNLFFEYNGGQIWEVDQRQKFLHPYGYANNTGSFN 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00671 323 Pfam Helix-loop-helix DNA-binding domain 148 195 IPR011598 GO:0046983
Viun3g00671 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 211 IPR036638 GO:0046983
Viun3g00671 323 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 37 241 IPR024097 GO:0006355
Viun3g00671 323 MobiDBLite consensus disorder prediction 24 78 - -
Viun3g00671 323 MobiDBLite consensus disorder prediction 109 155 - -
Viun3g00671 323 MobiDBLite consensus disorder prediction 92 108 - -
Viun3g00671 323 CDD bHLH_AtBPE_like 134 219 - -
Viun3g00671 323 Gene3D - 141 212 IPR036638 GO:0046983
Viun3g00671 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 194 IPR011598 GO:0046983
Viun3g00671 323 SMART finulus 150 200 IPR011598 GO:0046983
Viun3g00671 323 MobiDBLite consensus disorder prediction 24 155 - -
Viun3g00671 323 FunFam Basic helix-loop-helix transcription factor 141 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00671 Viun-Chr3 4118777 4121440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00671 90 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 55.000 4.13e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g00671 HLH 3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00671 - - vun:114179333 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00671 3 4118777 4121440 Viun3g00671 3 4118777 4121440 ECH