Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00665 ATGGGTTGCGCCCTTCGGAAGCCGGCGGGTACTGTCGACAGTCGCCGGCATAAAACTTCGACTGCCGGCGGCGGAAATAATGCCGTTAAGATTCAGGAGAAGCAGGAGACTCTGCACGTCGGCGAACTTTCCGGCGTTATTCTGGCGCCGGAGCGCCGGAGACGTCGACTTGACTCATTCGTGACGAGTCACCAAGGGTGGCCGCCGTGGCTGATGGTCGTCGCCGGCGACGCACTTGGAGACTGGACTCCTCGCCGTGCCAACACGTTCGAGAAGCTTGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTACAAAGCAAGGGACCTTGTAACTGGGAAAATAGTGGCTTTGAAGAAGGTTAGATTTGACAATTTGGAGGCAGAGAGTGTGAAGTTCATGGCAAGAGAGATTCTTGTTTTGAGGAGGCTTGATCACCCCAATGTTGTGAAGCTTGAAGGGTTGGTTACTTCAAGAATATCATCCAGTCTTTACTTGGTGTTTGAGTACATGGAACATGATCTTGCTGGTCTTGCAGCTGGTGTGGGTGTCAAATTCTCTGAGCCACAGATCAAATGTTATATGAAGCAATTGCTATCTGGGCTTGAGCATTGCCACAGCAGAGGTGTTTTGCACCGTGATATCAAGGGTTCCAATCTGCTCATTGACAACGAAGGAATACTTAAAATTGCAGATTTTGGATTGGCAACTTTCTATGATCCTAAGCAAAAACATCCTATGACCAGTAGAGTTGTGACCCTTTGGTACCGTCCCCCCGAGCTTCTTCTGGGGGCTACATCCTATGGCATTGGTGTCGACCTTTGGAGTGCTGGCTGCATTTTAGCAGAACTTCTTGCTGGAAAGCCAATCATGCCTGGCCGAACAGAGGTTGAGCAGCTGCACAAGATATTTAAGTTATGTGGCTCTCCATCCGAGGAATATTGGAAGAAATATAGATTGCCAAATGCTACACTCTTTAAGCCGCAGCAACCTTATAAAAGAAACATCTTAGAAACATTCAAGGATTTCCCTTCTTCCTCATTACCCCTGATTGAAACTCTTCTTGCAATTGATCCCAATGATCGTGGCACAGCCTCATCTGCTCTAAATAGTGAGTTCTTTACCACTGAGCCATATACTTGTGAACCATCTAGTTTGCCAAAGTATCCTCCTACCAAAGAATTGGATATAAAACTGAGAGATGAAGAAGCAAGAAGGCAGAAAGCTGTTAGTGGAAAAACTAATGCAGTTGATGGTGCCAAAAGGGTTAGAGTACGCGAGCGTAGTTTGGCCATTCCGGCCCCAGAAGCCAATGCGGAGATCCAAACGAACTTAGATAGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGTAAGAGTGAGAAATTCCCACCTCCTCACCAGGATGGAGCTGTTGGATATCCACTTGATGCATCAAACAAAGGAGCTGTTTCATTTGGAGCCACCGAAACTTCCACAGCCTCTACCATGTTTCATTCAAAATCTGCTGGATCTGTTAAAACTCATGATCCTGCCATAGACAAAGTGAGGAGAACTAATACTGCACACACCCAGATGACTTCACCTTGGAAAATTTTTCGTTCATTCAAGCTATCAACAATTGGTCATTCTTTTGATTCATTATTTAGAAGCAATTAA 1659 0.4599 MGCALRKPAGTVDSRRHKTSTAGGGNNAVKIQEKQETLHVGELSGVILAPERRRRRLDSFVTSHQGWPPWLMVVAGDALGDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEAESVKFMAREILVLRRLDHPNVVKLEGLVTSRISSSLYLVFEYMEHDLAGLAAGVGVKFSEPQIKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFYDPKQKHPMTSRVVTLWYRPPELLLGATSYGIGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKYRLPNATLFKPQQPYKRNILETFKDFPSSSLPLIETLLAIDPNDRGTASSALNSEFFTTEPYTCEPSSLPKYPPTKELDIKLRDEEARRQKAVSGKTNAVDGAKRVRVRERSLAIPAPEANAEIQTNLDRWRVVTHANAKSKSEKFPPPHQDGAVGYPLDASNKGAVSFGATETSTASTMFHSKSAGSVKTHDPAIDKVRRTNTAHTQMTSPWKIFRSFKLSTIGHSFDSLFRSN 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00665 552 FunFam probable serine/threonine-protein kinase At1g54610 77 172 - -
Viun3g00665 552 Gene3D Phosphorylase Kinase; domain 1 77 172 - -
Viun3g00665 552 Pfam Protein kinase domain 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00665 552 SMART serkin_6 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00665 552 ProSiteProfiles Protein kinase domain profile. 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00665 552 MobiDBLite consensus disorder prediction 1 26 - -
Viun3g00665 552 PANTHER CELL DIVISION PROTEIN KINASE 88 378 - -
Viun3g00665 552 SUPERFAMILY Protein kinase-like (PK-like) 84 379 IPR011009 -
Viun3g00665 552 CDD STKc_CDK9_like 90 374 - -
Viun3g00665 552 Gene3D Transferase(Phosphotransferase) domain 1 173 414 - -
Viun3g00665 552 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Viun3g00665 552 FunFam probable serine/threonine-protein kinase At1g54610 173 414 - -
Viun3g00665 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00665 Viun-Chr3 4088983 4093131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00665 82 411 Core Cell Cycle Gene Families AT5G10270 50.867 1.43e-117 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Viun3g00665 Pkinase 1.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00665 K08819 - gmx:100789359 981.859