Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00634 ATGGACAAAAATATCTCATCTTCATCTTCATCTTCATCTTCATCTTCATCTTCTTCTTCTTCTTACTTTAAACTTGGTGATCATCACGTTAAGCCATCCCAGAAAGTTGGAGAACAAATCAAACAACGCAGATTTGCATTTCAAACAAGGAGTCAGGTTGATATACTCGATGATGGATATCGTTGGAGAAAGTATGGAGAAAAGTCCGTCAAAAACAATAAATTCCCTAGAAGCTACTACAGATGTTCATATCGAGGTTGCAATGTGAAGAAACAAATCCAACGGCATAGCAAAGACGAAGAGATTGTGGTAACAACCTATGAAGGCACACATTCTCATCCTGTGGAGAAGACAAGTGAAAGTTTCGAGCAGATACTCAGAAATCATCACATATATAGTCTCACTCCATAA 411 0.3771 MDKNISSSSSSSSSSSSSSSSYFKLGDHHVKPSQKVGEQIKQRRFAFQTRSQVDILDDGYRWRKYGEKSVKNNKFPRSYYRCSYRGCNVKKQIQRHSKDEEIVVTTYEGTHSHPVEKTSESFEQILRNHHIYSLTP 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00634 136 SMART WRKY_cls 56 115 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g00634 136 SUPERFAMILY WRKY DNA-binding domain 48 115 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g00634 136 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 11 119 IPR044810 GO:0003700
Viun3g00634 136 FunFam WRKY transcription factor 57 42 116 - -
Viun3g00634 136 Pfam WRKY DNA -binding domain 57 114 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g00634 136 MobiDBLite consensus disorder prediction 1 38 - -
Viun3g00634 136 ProSiteProfiles WRKY domain profile. 51 116 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g00634 136 Gene3D WRKY domain 43 109 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g00634 136 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00634 Viun-Chr3 3860510 3861525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00634 43 133 WRKY Transcription Factor Family AT5G13080 75.824 1.51e-51 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun3g00634 WRKY 1.2e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00634 3 3860510 3861525 Viun3g00634 3 3860510 3861525 ECH