Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00627 ATGGACTGGAATCTGAAAGCACCTTCTTGGGATTTGAGTGAAGTGGATCAGGGAAACTTACCCAACATGGAAACAGTGGAAGGTTCAAGCAGATATGGAATGTTTAGAAGTAAGGGGGAATTTTCAGTTGACTTGAAGCTTGGTCAGGTGGGAAATTCTGGCACAGAATCAGTGTTGACCAAATCCAAAGATGCTGTTGGACTCTCCAAAATCTCATCTTCATCTTCATCTTCTGCCTCATCTAAGAGACCTCGTGCCCTTGCCAACGCCACACACACAGTCTCGTGCCTTGTCGATGGCTGCCACTCTGATCTCACCAACTGCAGAGACTATCACAGGCGCCATAAGGTCTGCGAAGTTCATTCCAAAACTGCACAAGTCACAATCGGAGGCCAGAAACAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAGGGGAAAAGGAGCTGCAGGAAGCGGTTAGATGGGCACAACCGACGGAGAAGAAAGCCCCAACCAGAACCTCTTACACGGTCTGGTAGTTTTTTGTCGAATTACCAAGGTACCCAGTTGCTACCTTTCTCAAGTTCACACGTATACCCATCGACTACTGTGATGAATCCCACGTGGGGTGGAATTGTTGCGTCTGGTGAAGTTAGGATTCATGGACACAACCAACAGCACCATAACCAGGGTGAGCTTTTTCTTGGGACAACTTCTCCAACCGGTTATAAAGAAGGGAAACAATTGGCCTTCATGCAAGGTGACCACTCTCTGAACAACCAAAGCCCACATCTCGCGGGTGGTTCCGTGAGCCAGGCCCAGATGTTTCTGCGGACCGGCCCGTGTTCTGAAAGCAGTGGGCTGAGGTGTAAAATGTTGTGCGATAGCCTAACAAGCTCGGTCCACGACTCCTCTCGTGCTCTCTCTCTTCTGTCATCACCACAGCCGCACAGTCCTGGAAATGGGTTGAGCCGAATGGTGAACCCGCATTCGCCCCTTATGCAGCCATTGGGCCTCAGCCTGCATGATGGTAACAGCTTGGGGCCCGTGGACCCGGTTTTGGGCCTTAATGGGAGTGACCATTCTTCGTCGATGTATAACATAGGTTCTAATGGATCGCAGGGGAACGAAGCCCATCCGCTGTTTCCCTTTCAATGGGGATAG 1164 0.5026 MDWNLKAPSWDLSEVDQGNLPNMETVEGSSRYGMFRSKGEFSVDLKLGQVGNSGTESVLTKSKDAVGLSKISSSSSSSASSKRPRALANATHTVSCLVDGCHSDLTNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGTQLLPFSSSHVYPSTTVMNPTWGGIVASGEVRIHGHNQQHHNQGELFLGTTSPTGYKEGKQLAFMQGDHSLNNQSPHLAGGSVSQAQMFLRTGPCSESSGLRCKMLCDSLTSSVHDSSRALSLLSSPQPHSPGNGLSRMVNPHSPLMQPLGLSLHDGNSLGPVDPVLGLNGSDHSSSMYNIGSNGSQGNEAHPLFPFQWG 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00627 387 MobiDBLite consensus disorder prediction 159 181 - -
Viun3g00627 387 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 40 369 IPR044817 GO:0003677
Viun3g00627 387 SUPERFAMILY SBT domain 94 175 IPR036893 GO:0003677|GO:0005634
Viun3g00627 387 ProSiteProfiles Zinc finger SBP-type profile. 93 170 IPR004333 GO:0003677
Viun3g00627 387 Gene3D - 87 157 IPR036893 GO:0003677|GO:0005634
Viun3g00627 387 FunFam Squamosa promoter-binding-like protein 14 87 157 - -
Viun3g00627 387 MobiDBLite consensus disorder prediction 307 329 - -
Viun3g00627 387 MobiDBLite consensus disorder prediction 307 325 - -
Viun3g00627 387 Pfam SBP domain 96 169 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00627 Viun-Chr3 3837259 3841213 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00627 1 386 SBP-box Gene Family AT5G50670 43.358 1.60e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun3g00627 SBP 4.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00627 - - gmx:100806507 622.083