Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00617 ATGCCTCAGGGAACCCTTGAAGTTTTTCTTGAATATGCCAAAGGCCTTGAAAACACAGATTTTCTCTCTGACATGGACCCTTATGTGATCCTCACATGTCGCACTCAAGAACAAAAAAGCAGTGTTCAATCAGGTAAAGGAAGTAATCCAAAGTGGAATGAAAATTTCGTATTCAACGTTTCCGAAGGCGTTAACGAACTCAGGTTAAAGATCATGGACAGTGATGCCATGTCTGCAGATGATCTCGTGGGAGAAGTTACCATTACGTTGGATGCATTGTTCAACGAAGGGAGTATTCCACCAACTTCATACAATGTTGTGAAGAATGACAGTTTTTGTGGGGAGATTAGAGTTGGCCTCACTTTTAAGCGTCAGGAACGAAGGGAACGCAGCATAGAGGAAGATTTTGGGGGATGGAAGGAGTCTAGTTGCACATACTAA 441 0.4263 MPQGTLEVFLEYAKGLENTDFLSDMDPYVILTCRTQEQKSSVQSGKGSNPKWNENFVFNVSEGVNELRLKIMDSDAMSADDLVGEVTITLDALFNEGSIPPTSYNVVKNDSFCGEIRVGLTFKRQERRERSIEEDFGGWKESSCTY 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00617 146 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 124 IPR035892 -
Viun3g00617 146 SMART C2_3c 5 102 IPR000008 -
Viun3g00617 146 PANTHER C2 DOMAIN-CONTAINING 1 128 - -
Viun3g00617 146 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Viun3g00617 146 Gene3D C2 domain 2 124 IPR035892 -
Viun3g00617 146 Pfam C2 domain 4 97 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00617 Viun-Chr3 3785544 3786924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00617 4 126 C2H2 Transcription Factor Family AT4G21160 29.268 1.20e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00617 - - gmx:100782974 222.246