Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00610 ATGTGGGCTTGGATGCTTGGTGAAGGGCGTAGGACGGTGTGCGAGGTGGCGTGCACCTACAACAAGGTGGCGCTCCGACACATGGGTGGCGGTCCGAGAACCTTTCCAGGTGGCGTTAACAAGTGGAAGTGGAAGCGCATGCACGAGAAACGCGCAAGAGACAAACAGAAGAGACTCATCGAACAAGAGAAGCAGCTCTACGAGGCTCGCATTCGCTCCCACATCCGTTCCACCCTCTCCCCCGACCACCGCTCCGCCGCCACCGCCACCCATCGCCCTTTATCCCCTAACGACCAAATCAAAGCCCTTGCGGACCGCTTCGTCAAAGAAGGCGCCCAAGATCTCTGGAACACTAACGACGGTCCCCTGACTCCAAACCCGACCCCGACACCGACCCCAAACCTTAATTTTCGCCCCAAACATTCTAGGGCCTACCGTTCGGTTCCTGAGGTTAGGAACAACCGTGTCGGGGCCCACAAGTATAGGTTTTGGCGGAAAGGTAGTGACGATTCTTCTTCCGATGAGAGCGAGAGTGAGAGTGAGAATGAGAATGAATTGAGTTTGAAGACGGGTAGCAGTGCTTCTTTGGGGGAGTATGATGTGAAGAGAGAGAAGAGGGTGGTGCCTAAGCCATCTGAAGAAGTTGAGTTTATTAGGCGTGAACTTATTAAGCGGAAGTTGAGACAGATTGAGGAGCAAGAGAGTGAGAAACAAAACAGCCATGAAAGTATTCTAAGCAACACAAGATTTGATGAGTCCGGTATATCACCGCAAACTATCAAGGCACTTTCTTCAGCTGGTTATGTTCATATGACACGGGTGCAAGAGGCTAGCCTCTCGATTTGCCTTGAGGGCCTGGATGCTTTAGTCAAATCTAAAACTGGCACGGGAAAAAGTGTAGCTTTTTTGCTTCCTGCTATTGAAACAGTTCTGAAAGCTATGACTAGCAATAAATCTCAACGGGTTCCCCCAATATATGTTCTTATTCTCTGCCCTACTAGAGAACTTGCTAGTCAAATTGCCGCTGTAGCGAAAGTTTTGCTGAAATATCAAGATGGCATTGGGGTGCAGACTCTTGTTGGAGGCATACGATTTAAAGTTGACCAAAAACGCCTTGAATCAGAACCATGCCAGATACTTGTTGCTACACCTGGTAGGTTACTGGATCATATTGAGAATAAGTCTGGAATATCTCTGCGATTAATGGGCTTGCGGATGCTTGTACTTGACGAAGCTGATCATTTACTCGACCTGGGATTTAGAAAGGATGTAGAAAAAATTGTGGATTGTTTGCCCCGTCAAAGGCAGTCTTTACTGTTTTCTGCAACCATACCAAAGGAGGTACGTCGTATATCCCAGCTTGTTTTGAAAAGGGAACACAAGTATGTTGATACTGTTGGAATGGGTTGCGTGGAAACTCCTGTTCAGGTGAAGCAATCTTATCTCGTTGCTCCTCACGAGTCACATTTTCAATTAGTGCATCATATTCTGAAGGAGCATATCTTGCAAACACCTGATTATAAGGTTATTGTATTTTGTATAACCGGAATGGTGACCTCACTCATGTATAACCTTCTTCGGGAAATGAAAATGAATGTCAGGGAGATGCATTCTCGAAAACCTCAGCTCTATCGTACTCGTATATCAGATGAGTTCAAGGAATCCAAACAATTGATTCTTGTCTCATCTGATGTTTCATCTCGGGGAATGAATTATCCTGATGTCACCTTAGTCATACAGGTTGGAATTCCTTCTGACCGAGAACAATACATACACCGCCTTGGAAGAACGGGTCGAGAAGACAAAGAAGGGGAAGGCATATTGTTGATTGCTCCATGGGAAAAGTACTTTTTAGAAGAAATTAAGGATCTACCTCTACAGGAATTACCCTTACCTGGCATATATCCACAGGCAAAACTGAAGATTGAGAATTCGATGGCAAAGATTGATAATGACATCAAAGAAGCTGCTTATCATGCTTGGCTTGGTTATTACAACTCTATCAGGGAAATTGGGAGGGAAAAGACCACTGTAGCTGAACTGGCAAACCAATTTTCTGAATCAATTGGTTTACAGAGGCCTCCTGCTCTCTTCCGAAAAACTGCTATAAAAATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGTAAATAG 2154 0.454 MWAWMLGEGRRTVCEVACTYNKVALRHMGGGPRTFPGGVNKWKWKRMHEKRARDKQKRLIEQEKQLYEARIRSHIRSTLSPDHRSAATATHRPLSPNDQIKALADRFVKEGAQDLWNTNDGPLTPNPTPTPTPNLNFRPKHSRAYRSVPEVRNNRVGAHKYRFWRKGSDDSSSDESESESENENELSLKTGSSASLGEYDVKREKRVVPKPSEEVEFIRRELIKRKLRQIEEQESEKQNSHESILSNTRFDESGISPQTIKALSSAGYVHMTRVQEASLSICLEGLDALVKSKTGTGKSVAFLLPAIETVLKAMTSNKSQRVPPIYVLILCPTRELASQIAAVAKVLLKYQDGIGVQTLVGGIRFKVDQKRLESEPCQILVATPGRLLDHIENKSGISLRLMGLRMLVLDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPKEVRRISQLVLKREHKYVDTVGMGCVETPVQVKQSYLVAPHESHFQLVHHILKEHILQTPDYKVIVFCITGMVTSLMYNLLREMKMNVREMHSRKPQLYRTRISDEFKESKQLILVSSDVSSRGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREDKEGEGILLIAPWEKYFLEEIKDLPLQELPLPGIYPQAKLKIENSMAKIDNDIKEAAYHAWLGYYNSIREIGREKTTVAELANQFSESIGLQRPPALFRKTAIKMGLKDIPGIRIRK 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00610 717 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 279 462 IPR014001 -
Viun3g00610 717 PANTHER RNA HELICASE 190 643 - -
Viun3g00610 717 MobiDBLite consensus disorder prediction 165 193 - -
Viun3g00610 717 Gene3D - 216 463 IPR027417 -
Viun3g00610 717 Pfam DEAD/DEAH box helicase 272 450 IPR011545 GO:0003676|GO:0005524
Viun3g00610 717 CDD SF2_C_DEAD 477 610 - -
Viun3g00610 717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 324 620 IPR027417 -
Viun3g00610 717 Coils Coil 45 65 - -
Viun3g00610 717 Gene3D - 472 698 IPR027417 -
Viun3g00610 717 MobiDBLite consensus disorder prediction 115 152 - -
Viun3g00610 717 Coils Coil 220 243 - -
Viun3g00610 717 SMART helicmild6 520 601 IPR001650 -
Viun3g00610 717 Pfam Helicase conserved C-terminal domain 495 599 IPR001650 -
Viun3g00610 717 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 248 276 IPR014014 GO:0003724
Viun3g00610 717 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 496 642 IPR001650 -
Viun3g00610 717 SMART ultradead3 267 478 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00610 Viun-Chr3 3758042 3762175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00610 248 626 Eukaryotic Initiation Factors Gene Family AT3G19760 26.515 8.56e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00610 - - vun:114177584 1371.3