Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00606 ATGGCTTTCAGCGGTACCCAACAGAAGTGCAAGGCTTGCGATAAAATTGTTCACTTCGTCGAAAGCTTTTCTGCCGATGGGGTCTCTTATCACAAAAACTGCTTCAGATGCAGCCATTGCAATGGCCTTCTCGCGATAAGCAACTACTGCTCCGGCGATGGAATTTTATACTGCAAGGTGCATTATGAGCAGCTTTTCAAGGAAACTGGCTCCTACCCCAAGAGAGTCAATTCTTCTCCAAAGCCACCAAACGAGCTGAATAGGACACCAAGCAAAATTTCTGCCTTCTTCTCTGGGACTCAAGATAAATGCTCAAAATGCAAGAAAACCGTCTATCCATTGGAAAAGTTGACAGTGGAAGGTGAGTTTTACCACAAATCATGCTTCAGGTGTGCACATGGAGGGTGTTTTCTGACTCCTTCAACCTATGCTGCTCTCGATGGGTTCCTATACTGCAAGCCACACTTCTCTCAGTTGTTCAAGGAGAAGGGAAGCTACAGTTATCTGTCGAAGCAAGCTTCATTGAAGAGAAGTGAAATGCTACAACAAGAGGCTGAGGCTGCGGCGGCTGCGGCGGCGGCTGCGGAGAGTAAGAAGGCTGCAAGTAATCGCTCAGAGTCAGAGTCAGAAGCAGAGGCAAAGGCAGAGACAGAAACAGAAACAGCAGAGGCAGAAACAGAGGCAGAGACAGAGAAAAAGGAAGATGAAGAGGAACCTAACTCTGACAAAGATCAGTAG 738 0.4715 MAFSGTQQKCKACDKIVHFVESFSADGVSYHKNCFRCSHCNGLLAISNYCSGDGILYCKVHYEQLFKETGSYPKRVNSSPKPPNELNRTPSKISAFFSGTQDKCSKCKKTVYPLEKLTVEGEFYHKSCFRCAHGGCFLTPSTYAALDGFLYCKPHFSQLFKEKGSYSYLSKQASLKRSEMLQQEAEAAAAAAAAAESKKAASNRSESESEAEAKAETETETAEAETEAETEKKEDEEEPNSDKDQ 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00606 245 PANTHER OS06G0237300 PROTEIN 99 234 - -
Viun3g00606 245 Coils Coil 178 198 - -
Viun3g00606 245 Coils Coil 214 234 - -
Viun3g00606 245 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Viun3g00606 245 FunFam LIM domain and actin-binding 1 98 168 - -
Viun3g00606 245 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Viun3g00606 245 SMART lim_4 9 61 IPR001781 -
Viun3g00606 245 SMART lim_4 103 155 IPR001781 -
Viun3g00606 245 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Viun3g00606 245 MobiDBLite consensus disorder prediction 186 245 - -
Viun3g00606 245 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Viun3g00606 245 Pfam LIM domain 10 65 IPR001781 -
Viun3g00606 245 Pfam LIM domain 104 159 IPR001781 -
Viun3g00606 245 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Viun3g00606 245 Gene3D Cysteine Rich Protein 4 74 - -
Viun3g00606 245 Gene3D Cysteine Rich Protein 98 168 - -
Viun3g00606 245 MobiDBLite consensus disorder prediction 201 221 - -
Viun3g00606 245 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 75 - -
Viun3g00606 245 FunFam LIM domain and actin-binding 1 4 74 - -
Viun3g00606 245 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00606 Viun-Chr3 3743471 3745098 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Viun3g00606 LIM 4.2e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00606 - K09377 vun:114179495 408.683