Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00602 ATGAAGTTGTGTACTTTACTGTTGTTGCTTGGTTTGGTTTCCGTGCTCTCTTTTGTGGCTTCTGTCAGGGTGCCTTCAAATGAAGTTTGGGCACTTAGAAGATTCAAAGAAGCTGTTTATGAAGATCCACATAAGGCTTTGTCCAACTGGAATACTCTGGAGTCAGATCCTTGTGGCTGGAATGGTGTTTCTTGCACTGGAACGCGAGATCATGTCATCAAGCTTAACATATCAGGGGCTTCGTTGAGGGGGTTTCTTGCTCCAGAATTTGGGAAAATCACCTACATACAAGAACTGATCTTACATGGCAACAATCTCATTGGAATAATACCTAAAGAATTGGGCATGTTGAAATCTCTTAAGGTGTTGGATTTGGGAATGAATCAGTTATCTGGACCAATTCCTCCGGAGATTGGAAATTCGACCCAACTTATGAAAATAAACCTGCAGTCGAATGGGTTGACTGGTAGGCTACCTCCGGAGCTAGGAAATTTGAAATACCTTCAAGAACTTCAACTGGACAGGAATAAGCTTCAAGGATCTCTTCCTGGTGGTAGCAGTTCAAATTTTTCTTCAAATGTGCATGAGATGTATGCCTCAGGTGTAAATTTAACTGGCTTCTGTCGTTCATCTCAGTTAAAAGTAGCAGATTTTTCATATAACTTTTTCGTTGGCAGCATACCCAAATGCTTGAAGTATCTTCCGAGATCAAGCTTTCAAGGAAATTGTTTCCATATCAAAGACATAAAACAGAGGACTTTGGTGCAATGCGCAGGTGCTTCACCGGCCCAAAGCGGTCCAGTAGTGAACCCAAAGTCCGAATCTGCTAACAAGCATGTAACCAAGCATAAAGAAACATCGAAACCTGCTTGGCTTTTGGCTCTAGAAATAGTGACGGGAACCATGGTTGGTTCTCTCTTTGTTATTGGTATTCTCACTGCAATTCAAAGGTGTAACAACAAATCATCTATCATTATACCTTGGAAAAAATCTGGAAGCGGAAAAGATTATTTGGCAATACATATAGACTCGGAGATGTTGAAGGATGTGACAAGGTATAGCAGACAGGATCTTGAAGTGGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCAGATAGTGTGGTGTACAAGGGTACGATGAAAGGTGGACCCGAGATTGCTGTAATTTCCCTCTGCATCAAGGAAGAAAATTGGACGGGATACCTTGAGCTCTATTTTCAAAGAGAGGTGGCAGACTTGGCAAGGTTAGATCATGATAACGCAGGAAAACTGCTAGGCTATTGTAGAGAGAGCAGTCCATTTACGAGGATGCTGGTTTTTGAATATGCATCAAACGGAACACTTTATGATCACCTGCATTGTTATGGAGAAGGGTGCCAGTTGTCATGGACACGGCGAATGAAAATTATCATTGGCATTGCACGTGGACTCAAGTATTTGCACAATGAAATTGAGCCACCATTCACCATCTCAGAATTGAATTCCAATGCTGTTTACCTCACAGAAGATTTTTCACCTAAGCTGGTGGATTTTGAAAGTTGGAAGACCGTTCTTGAAAGATCAGAAAAAAATTCTGGTTCAGTTAGCAGCCAAGGTCCTGTTTGTGTTCTACCAAACTCCCTTGAAGCACGCCATGTCGACCCCAAAGGAAACATATATGCTTTTGGTGTACTTCTACTGGAGATAATCAGTGGAAGACCTCCATACTGCAAGGACAAAGGGTACTTGGTGGATTGGGCCAGGGACTATCTTGAAATGCCAGAAGTAATGTCATATGTGGTGGCTCCTGAGTTGAAACATTTTAGATATGAAGACCTCAAAGCAATATGTGAGGTGATAACTCTTTGCATCAGCCCTGATTCTTCTGTCCGTCCATCAATGCGTGAATTATGCATTATGTTGGAGAGCAGAATAGACACATCAATAAATGTGGAGCTAAAGGCATCATCTCTGGCTTGGGCTGAGCTTGCCCTTTCATCATAA 1989 0.4213 MKLCTLLLLLGLVSVLSFVASVRVPSNEVWALRRFKEAVYEDPHKALSNWNTLESDPCGWNGVSCTGTRDHVIKLNISGASLRGFLAPEFGKITYIQELILHGNNLIGIIPKELGMLKSLKVLDLGMNQLSGPIPPEIGNSTQLMKINLQSNGLTGRLPPELGNLKYLQELQLDRNKLQGSLPGGSSSNFSSNVHEMYASGVNLTGFCRSSQLKVADFSYNFFVGSIPKCLKYLPRSSFQGNCFHIKDIKQRTLVQCAGASPAQSGPVVNPKSESANKHVTKHKETSKPAWLLALEIVTGTMVGSLFVIGILTAIQRCNNKSSIIIPWKKSGSGKDYLAIHIDSEMLKDVTRYSRQDLEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEENWTGYLELYFQREVADLARLDHDNAGKLLGYCRESSPFTRMLVFEYASNGTLYDHLHCYGEGCQLSWTRRMKIIIGIARGLKYLHNEIEPPFTISELNSNAVYLTEDFSPKLVDFESWKTVLERSEKNSGSVSSQGPVCVLPNSLEARHVDPKGNIYAFGVLLLEIISGRPPYCKDKGYLVDWARDYLEMPEVMSYVVAPELKHFRYEDLKAICEVITLCISPDSSVRPSMRELCIMLESRIDTSINVELKASSLAWAELALSS 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00602 662 Gene3D Ribonuclease Inhibitor 25 255 IPR032675 -
Viun3g00602 662 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Viun3g00602 662 Gene3D Transferase(Phosphotransferase) domain 1 445 652 - -
Viun3g00602 662 PANTHER PROTEIN MALE DISCOVERER 2 16 660 - -
Viun3g00602 662 Gene3D Phosphorylase Kinase; domain 1 339 444 - -
Viun3g00602 662 SUPERFAMILY L domain-like 27 235 - -
Viun3g00602 662 ProSiteProfiles Protein kinase domain profile. 363 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00602 662 FunFam Inactive receptor-like serine/threonine-protein kinase 337 444 - -
Viun3g00602 662 SUPERFAMILY Protein kinase-like (PK-like) 343 637 IPR011009 -
Viun3g00602 662 Pfam Protein tyrosine and serine/threonine kinase 367 633 IPR001245 GO:0004672|GO:0006468
Viun3g00602 662 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 25 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00602 Viun-Chr3 3692521 3696888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00602 71 637 Receptor kinase-like Gene Family AT5G56040 28.019 3.01e-54 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Viun3g00602 PK_Tyr_Ser-Thr 2.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00602 - - gmx:100781978 1137.48