Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00589 ATGGATGGGAGAGAGGTTATGGCATTTTCTGGTGGCTCAGCTTCATATTACATGCATAGAGGAGGGGTTGGAGGGTCTGGTTCTGGATCACTCAGTGGTGGAGGGGAGTTCCAAGCTGCCCCTGGGTTCAGACCTTTATCAAACCCTGGCATTCAAGCTGAATCAAATTCAAGGGGTCAGGGAGGTGGTTCTGTAGGGTCTAGCTCCATATTTTCTATGGAGCCTCCTCAGGGTCGTGCCAATTTTAACCATGACATTGGCATTGGCAGTGGGGCACCTTCAAGTGAGCCTGTTAAGAAGAAAAGAGGGAGACCCCGTAAATATGGTCCTGATGGAACAGTTTCTTTGAGGTTGTCTCCAATGTCTGCCCCCGCTAACTCCACCCAGGGTGAAAATGCAACCACCCTTTCTCAGAAAAAGGGAAGAGGGCGCCCACCTGGATCTGGAAGGAAGCAACAGCTAGCTGCATTAGGTGAATGGATGAATAGTTCAGCAGGCTTGGCCTTTTCACCTCATGTTGTCACTATAGGAGTTGGGGAGGACATTGTGGCAAAGTTATTATCGTTATCTCAGCAGAGACCAAGGGCTCTTTGCGTTTTGTCAGGCACTGGGACAGTTTCTTCAGTCACTCTACGACAGCCTGCTTCTACCAATGCCAGTGTAACTTTTGAGGGACGATTCCAAATACTATGCTTGTCTGGTTCTTACTTGGTTGCTGAAGATGGTGGACCCTCCAATAGAACTGGTGGCATTAGTGTTTCACTTTCTAGTCCTGATGGTCATGTTATTGGTGGTGGTGTTGCTGTGCTTATTGCTGGGAGCCCAGTGCAGGTGGTATTGTGCAGTTTTGTGTATGGTGGCTCAAAGACAAAGCCTAAACAAGGGCTCACTATCACAGATGAAAGTGGTGAGCACCCTCAGCATAATGACAAGATGGCTACTCCAGCCAGTGCTCCACCTGGTCATAATCAAAACTACCTCCCTTCTGGCGCACACATTTGGCCTGGATCTCAACCGGCAGAGCTGAAAAACACGCAAACCCACACTGGCATTGACCTGACTCGTGGGTGA 1071 0.4921 MDGREVMAFSGGSASYYMHRGGVGGSGSGSLSGGGEFQAAPGFRPLSNPGIQAESNSRGQGGGSVGSSSIFSMEPPQGRANFNHDIGIGSGAPSSEPVKKKRGRPRKYGPDGTVSLRLSPMSAPANSTQGENATTLSQKKGRGRPPGSGRKQQLAALGEWMNSSAGLAFSPHVVTIGVGEDIVAKLLSLSQQRPRALCVLSGTGTVSSVTLRQPASTNASVTFEGRFQILCLSGSYLVAEDGGPSNRTGGISVSLSSPDGHVIGGGVAVLIAGSPVQVVLCSFVYGGSKTKPKQGLTITDESGEHPQHNDKMATPASAPPGHNQNYLPSGAHIWPGSQPAELKNTQTHTGIDLTRG 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00589 356 MobiDBLite consensus disorder prediction 119 141 - -
Viun3g00589 356 ProSiteProfiles PPC domain profile profile. 163 307 IPR005175 -
Viun3g00589 356 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 67 320 IPR039605 GO:0003680
Viun3g00589 356 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 289 - -
Viun3g00589 356 Gene3D - 171 304 - -
Viun3g00589 356 Pfam Plants and Prokaryotes Conserved (PCC) domain 171 284 IPR005175 -
Viun3g00589 356 MobiDBLite consensus disorder prediction 290 356 - -
Viun3g00589 356 CDD DUF296 171 283 IPR005175 -
Viun3g00589 356 MobiDBLite consensus disorder prediction 339 356 - -
Viun3g00589 356 MobiDBLite consensus disorder prediction 19 153 - -
Viun3g00589 356 MobiDBLite consensus disorder prediction 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00589 Viun-Chr3 3645530 3649730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00589 1 356 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 49.096 3.86e-99 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00589 - - gmx:100813888 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00589 3 3645530 3649730 Viun3g00589 3 3645530 3649730 ECH
Viun2g02577 2 31789580 31793769 Viun3g00589 3 3645530 3649730 PCT