Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00588 ATGGGTTGTGACTTTTCTAAGTACACAGCATGCTGCATGGGTACAGAGGAATATGGTCATCCGGCTCCTGAGGATCAGGTTGACGGTGAAAACGAAGACAATGCTGTTGAGGGCATTGACTTGCCACGGTTTCATGAATTCACCATTGATCAGCTTAGGAGGGCTACATCCGGATTTGCTGTTGAAAATATAGTTTCTGAGCATGGAGAAAAAGCTCCAAATGTAGTCTATAAAGGGAGACTTGATAATCAGATGCGAATTGCAGTCAAACGGTTCAACAGAAATGCCTGGCCTGAAGCGCAGCCATTTTTGGAGGAGGCCAGGGCTGTTGGTCAGCTGAGGAACCAACGACTGGTAAATCTGCTTGGATGTTGCTGTGAAGGTGACGAGAGGTTACTTGTTGCAGAATATATGTCCAATGATACTTTGGCGAAACATTTATTCCATTGGGAAAATCAGCCCATGAGATGGGCAATGCGAATGAGAGTTGCATTGTTCCTTGCCCAAGCTCTAGAGTACTGTACCAGTAAAGGACGTGCACTATATCATGATCTAAATGCTTACAGAGTTCTTTATGATGATGACTACAATCCTAGACTTTCATGCTTTGGTTTGATGAAAAATAGTCGAGATGGAAAAAGTTATAGTACGAATTTGGCGTTTACTCCACCTGAATATCTCAGGACAGGCAGAGTCACTCCAGAGAGTGTAACTTATAGCTTTGGCACACTATTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGTCATGCCCTTGACCTAATTAGAGACAAGAACCTTCAGATGCTATCAGATTCTTGCTTAGAAGGGGAGCTTACAAATGATGATGGGACTGAATTAGTGCGTCTGGCCTCTCTATGTTTGCAATCTGAACCACGAGAGCGTCCTAATCCAAAGTCACTGGTTGCTGCTCTAATACCTTTACAGAAGGATTCTGAGGTTCCTTCTCATGTACTGATGGGTATACCAGATGGTGCAGCTACTTTTCCCCTTACACCTCTTGGAGAAGCTTGTCTACGAATGGATCTGACAGCCCTGCATGAGGTGATGGAGAAAATGGGGTATAAAGACGATGAGGGTGCAGCAACTGAGCTTTCATTCCAAATGTGGACGAACCAGATGCAGGAAACATTGGACTCAAAGAAGAAAGGGGATGCTGCTTTTCGGCTTAAGGATTTTAAAACGGCAATTGATGGCTATACGCAGTTCATTGATGTTGGAACCATGGTTTCTCCAACGGTTTATGCACGTCGTAGTTTATGTTATCTTATGAGCAACATGGCTGATGAAGCACTTAATGATGCAATGCAAGCCCAAGTAATATCACCCGTTTGGTATATTGCGTTTTATTTACAAGCTGTTGCACTTTTAGCAATGGGCAAGGAGAATGATGCCCAAATGGCACTTAAAGAAGGTTCCTCTCTTGAAACTAAAAAGAGCACAAATTAG 1473 0.4331 MGCDFSKYTACCMGTEEYGHPAPEDQVDGENEDNAVEGIDLPRFHEFTIDQLRRATSGFAVENIVSEHGEKAPNVVYKGRLDNQMRIAVKRFNRNAWPEAQPFLEEARAVGQLRNQRLVNLLGCCCEGDERLLVAEYMSNDTLAKHLFHWENQPMRWAMRMRVALFLAQALEYCTSKGRALYHDLNAYRVLYDDDYNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDKNLQMLSDSCLEGELTNDDGTELVRLASLCLQSEPRERPNPKSLVAALIPLQKDSEVPSHVLMGIPDGAATFPLTPLGEACLRMDLTALHEVMEKMGYKDDEGAATELSFQMWTNQMQETLDSKKKGDAAFRLKDFKTAIDGYTQFIDVGTMVSPTVYARRSLCYLMSNMADEALNDAMQAQVISPVWYIAFYLQAVALLAMGKENDAQMALKEGSSLETKKSTN 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00588 490 Gene3D Transferase(Phosphotransferase) domain 1 139 330 - -
Viun3g00588 490 FunFam probable serine/threonine-protein kinase At4g35230 383 490 - -
Viun3g00588 490 Gene3D Tetratricopeptide repeat domain 382 490 IPR011990 GO:0005515
Viun3g00588 490 SUPERFAMILY TPR-like 389 483 IPR011990 GO:0005515
Viun3g00588 490 ProSiteProfiles Protein kinase domain profile. 62 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00588 490 FunFam probable serine/threonine-protein kinase At4g35230 34 137 - -
Viun3g00588 490 Pfam Protein tyrosine and serine/threonine kinase 75 312 IPR001245 GO:0004672|GO:0006468
Viun3g00588 490 FunFam probable serine/threonine-protein kinase At5g41260 139 330 - -
Viun3g00588 490 SUPERFAMILY Protein kinase-like (PK-like) 40 322 IPR011009 -
Viun3g00588 490 Gene3D Phosphorylase Kinase; domain 1 34 137 - -
Viun3g00588 490 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 27 488 IPR045845 GO:0004672|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00588 Viun-Chr3 3628931 3639256 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00588 20 338 Glycoside Hydrolase AT3G07070 32.665 2.51e-41 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Viun3g00588 PK_Tyr_Ser-Thr 2.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00588 K14500 - gmx:100819210 920.998