Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00587 ATGAGAGCTAGCAACCAAAGTCCTTTCACTTTCCCTGTCTTTCATAGTTTTGACTGTTTGGAATCCCTGCGCTTGCTGAGGGAGGCACCGTTAAAGTTGATTGACCAGGACTGCTCTGATTTGCTGCTGACAGAAAGGGTTGGGATGGGTTGTGACTTTTCTAAGTACACAGCATGCTGCATGGGTACAGAGGAATATGGTCATCCGGCTCCTGAGGATCAGGTTGACGGTGAAAACGAAGACAATGCTGTTGAGGGCATTGACTTGCCACGGTTTCATGAATTCACCATTGATCAGCTTAGGAGGGCTACATCCGGATTTGCTGTTGAAAATATAGTTTCTGAGCATGGAGAAAAAGCTCCAAATGTAGTCTATAAAGGGAGACTTGATAATCAGATGCGAATTGCAGTCAAACGGTTCAACAGAAATGCCTGGCCTGAAGCGCAGCCATTTTTGGAGGAGGCCAGGGCTGTTGGTCAGCTGAGGAACCAACGACTGGTAAATCTGCTTGGATGTTGCTGTGAAGGTGACGAGAGGTTACTTGTTGCAGAATATATGTCCAATGATACTTTGGCGAAACATTTATTCCATTGGGAAAATCAGCCCATGAGATGGGCAATGCGAATGAGAGTTGCATTGTTCCTTGCCCAAGCTCTAGAGTACTGTACCAGTAAAGGACGTGCACTATATCATGATCTAAATGCTTACAGAGTTCTTTATGATGATGACTACAATCCTAGACTTTCATGCTTTGGTTTGATGAAAAATAGTCGAGATGGAAAAAGTTATAGTACGAATTTGGCGTTTACTCCACCTGAATATCTCAGGACAGGCAGAGTCACTCCAGAGAGTGTAACTTATAGCTTTGGCACACTATTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGTCATGCCCTTGACCTAATTAGAGACAAGAACCTTCAGATGCTATCAGATTCTTGCTTAGAAGGGGAGCTTACAAATGATGATGGGACTGAATTAGTGCGTCTGGCCTCTCTATGTTTGCAATCTGAACCACGAGAGCGTCCTAATCCAAAGTCACTGGTTGCTGCTCTAATACCTTTACAGAAGGATTCTGAGGTTCCTTCTCATGTACTGATGGGTATACCAGATGGTGCAGCTACTTTTCCCCTTACACCTCTTGGAGAAGCTTGTCTACGAATGGATCTGACAGCCCTGCATGAGGTGATGGAGAAAATGGGGTATAAAGACGATGAGGGTGCAGCAACTGAGCTTTCATTCCAAATGTGGACGAACCAGATGCAGGAAACATTGGACTCAAAGAAGAAAGGGGATGCTGCTTTTCGGCTTAAGGATTTTAAAACGGCAATTGATGGCTATACGCAGTTCATTGATGTTGGAACCATGGTTTCTCCAACGGTTTATGCACGTCGTAGTTTATGTTATCTTATGAGCAACATGGCTGATGAAGCACTTAATGATGCAATGCAAGCCCAAGTAATATCACCCGTTTGGTATATTGCGTTTTATTTACAAGCTGTTGCACTTTTAGCAATGGGCAAGGAGAATGATGCCCAAATGGCACTTAAAGAAGGTTCCTCTCTTGAAACTAAAAAGAGCACAAATTAG 1617 0.4372 MRASNQSPFTFPVFHSFDCLESLRLLREAPLKLIDQDCSDLLLTERVGMGCDFSKYTACCMGTEEYGHPAPEDQVDGENEDNAVEGIDLPRFHEFTIDQLRRATSGFAVENIVSEHGEKAPNVVYKGRLDNQMRIAVKRFNRNAWPEAQPFLEEARAVGQLRNQRLVNLLGCCCEGDERLLVAEYMSNDTLAKHLFHWENQPMRWAMRMRVALFLAQALEYCTSKGRALYHDLNAYRVLYDDDYNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDKNLQMLSDSCLEGELTNDDGTELVRLASLCLQSEPRERPNPKSLVAALIPLQKDSEVPSHVLMGIPDGAATFPLTPLGEACLRMDLTALHEVMEKMGYKDDEGAATELSFQMWTNQMQETLDSKKKGDAAFRLKDFKTAIDGYTQFIDVGTMVSPTVYARRSLCYLMSNMADEALNDAMQAQVISPVWYIAFYLQAVALLAMGKENDAQMALKEGSSLETKKSTN 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00587 538 Gene3D Phosphorylase Kinase; domain 1 83 185 - -
Viun3g00587 538 FunFam probable serine/threonine-protein kinase At4g35230 431 538 - -
Viun3g00587 538 SUPERFAMILY TPR-like 437 531 IPR011990 GO:0005515
Viun3g00587 538 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 74 536 IPR045845 GO:0004672|GO:0009742
Viun3g00587 538 Pfam Protein tyrosine and serine/threonine kinase 123 360 IPR001245 GO:0004672|GO:0006468
Viun3g00587 538 FunFam probable serine/threonine-protein kinase At5g41260 187 378 - -
Viun3g00587 538 SUPERFAMILY Protein kinase-like (PK-like) 88 370 IPR011009 -
Viun3g00587 538 Gene3D Tetratricopeptide repeat domain 430 538 IPR011990 GO:0005515
Viun3g00587 538 FunFam probable serine/threonine-protein kinase At4g35230 82 185 - -
Viun3g00587 538 Gene3D Transferase(Phosphotransferase) domain 1 187 378 - -
Viun3g00587 538 ProSiteProfiles Protein kinase domain profile. 110 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00587 Viun-Chr3 3628670 3639232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00587 68 386 Glycoside Hydrolase AT3G07070 32.378 4.92e-41 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Viun3g00587 PK_Tyr_Ser-Thr 2.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00587 K14500 - gmx:100819210 920.998