Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00579 ATGTCGAAAAGCAATAAATCGCCCAAAAATGACCAACAGTCCATAAAATATTGGCGGATTCAACATGGAGGAGCGTCCTCTCAGAAGGATCTTTCGTGTGCAGATTATTCGCCTTCTCTTTCCAACGACGAGAATAAGCAACGGTATGGAAGTTTTCAACCAAAGTCCCCTCAGATACTGAGCACATCTCAGCTCATCTCTGCAATCGGTCAGGTATGCTATTCTGCAAGTAAATCACTCTCGGTTTTACTCCCAAAAGAAAATTTGAATCAGGATGATAATGGACTCTCAAGAGAGAAAATTCTGGATAACATTGGAGAGAGAAAGAATGACCTGGTATATACTTCAAATGGCACTAAATTCTATCCTCTTACCGCGGATGCTGCAAAGATTGTGCGGGAAAGACTGGATTTTCCTACGGTAACGAAGAAGATATCAGTGTTTGAATCTCCTAATGAAAGTCAGGAGTATATCCATTCTTTATTACAGAGGTTTTCAAAGGCTAGTGATAAAATAACAAATAAAGATTGTAAAAGAATGAAACTAGCGAGGGAGGAAATGTTATTTAAATCAGGAAATGTATATCAGTGGGCAGGTAGAAATGCTGTTGAGATGCTAAATTGTCAAATGAATGTTCCTCAGCCTGAGAACCTGGAAACTAAATCCTCAGTTTCTGGCAGTGACATTTCCTTAGATACAAGCGCCCCTGCATTAGCAAACGAGGAGAGGGATGTGTGCAGTCATGATTCAATCACACACCAAAGTCAATCATTGTCCAATGCTGAGGCAGATGTGGGTGATTGTCACATAAACAGTTTAGCTTTATATACTAGTGCTTCTGAGCAGTGCCAACATGACATTGATGACAATGAATCACTGGAAGTTCAAAGAAAGCAATTGTTGGATATAACTAATGATGAACCTAAGCTTCAGACTTTCTCTGCAACCCATCTGAAGCCTCGTAAGTCCCAAGCCAAGCAAGAACATGCTTTTTCAGGGGCGTTAGCTGGTGTATGTGTCAGCCTTTGTCTGCATCCTGTTGACACAATCAAGACAGTTATTCAATCATGCCGTGCTGAACACCAGTCCATCTTTTACATTGGCAAATCAATTGTTTCTGATAGAGGTTTGCTTGGACTATATCGTGGAATTACCACAAATATTGCATCTTCTGCTCCAATTTCTGCAGTTTATATCTTCTCCTATGAATCAGTCAAAGCAGCTTTGCTTCCTTATCTTCCAAAGGAGTATTATTCTATTGCCCATTGTGTAGGAGGTGGTTGTGCAAGCATTGCTACATCTTTCATTTTTACTCCTAGTGAGCGAATAAAGCAGCAGCTGCAAGTTCGTTCACAATATCGCAACTGTTGGGATGCATTGGTTGGAATTATCAGAAACGGGGGTTTTACCTCCCTATATGCAGGTTGGAGAGCTGTACTATGCCGGAATATTCCACATTCAATTATCAAGTTTTACACATATGAAAGTTTGAAGGAAGTGATGCCATCAAGTGTTCAACCCTACACATTACAAACTTTAGTATGTGGAGGATTAGCTGGATCTACTGCTGCTTTATTCACAACTCCTTTTGATGTGATCAAGACTAGATTACAGACACAGGTTCCTGGATCTTCAAACCAATACGATAGTGTGCTCCACGCCCTCTACGAAATTAGTAAGGTTGAAGGTTTGAAGGGCTTGTACAGGGGGTTGATTCCAAGGTTGATTATGTACATGACGCAAGGATCACTGTTTTTTGCTTCATATGAATTTTTCAAGAGGGCATTTTCTCTGGAAGTATCACATGGAAGGGATGTTGAGAGAGAAGAACCTACGAAGTAA 1842 0.405 MSKSNKSPKNDQQSIKYWRIQHGGASSQKDLSCADYSPSLSNDENKQRYGSFQPKSPQILSTSQLISAIGQVCYSASKSLSVLLPKENLNQDDNGLSREKILDNIGERKNDLVYTSNGTKFYPLTADAAKIVRERLDFPTVTKKISVFESPNESQEYIHSLLQRFSKASDKITNKDCKRMKLAREEMLFKSGNVYQWAGRNAVEMLNCQMNVPQPENLETKSSVSGSDISLDTSAPALANEERDVCSHDSITHQSQSLSNAEADVGDCHINSLALYTSASEQCQHDIDDNESLEVQRKQLLDITNDEPKLQTFSATHLKPRKSQAKQEHAFSGALAGVCVSLCLHPVDTIKTVIQSCRAEHQSIFYIGKSIVSDRGLLGLYRGITTNIASSAPISAVYIFSYESVKAALLPYLPKEYYSIAHCVGGGCASIATSFIFTPSERIKQQLQVRSQYRNCWDALVGIIRNGGFTSLYAGWRAVLCRNIPHSIIKFYTYESLKEVMPSSVQPYTLQTLVCGGLAGSTAALFTTPFDVIKTRLQTQVPGSSNQYDSVLHALYEISKVEGLKGLYRGLIPRLIMYMTQGSLFFASYEFFKRAFSLEVSHGRDVEREEPTK 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00579 613 FunFam Mitochondrial substrate carrier protein-like 450 608 - -
Viun3g00579 613 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 286 599 - -
Viun3g00579 613 FunFam S-adenosylmethionine carrier 1, chloroplastic/mitochondrial isoform A 296 417 - -
Viun3g00579 613 ProSiteProfiles Solute carrier (Solcar) repeat profile. 417 500 IPR018108 -
Viun3g00579 613 Pfam Mitochondrial carrier protein 509 597 IPR018108 -
Viun3g00579 613 Pfam Mitochondrial carrier protein 328 409 IPR018108 -
Viun3g00579 613 Pfam Mitochondrial carrier protein 419 502 IPR018108 -
Viun3g00579 613 ProSiteProfiles Solute carrier (Solcar) repeat profile. 507 595 IPR018108 -
Viun3g00579 613 MobiDBLite consensus disorder prediction 1 55 - -
Viun3g00579 613 ProSiteProfiles Solute carrier (Solcar) repeat profile. 324 408 IPR018108 -
Viun3g00579 613 Gene3D Mitochondrial carrier domain 417 610 IPR023395 -
Viun3g00579 613 Gene3D Mitochondrial carrier domain 309 416 IPR023395 -
Viun3g00579 613 SUPERFAMILY Mitochondrial carrier 328 592 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00579 Viun-Chr3 3585229 3589463 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00579 307 596 Chloroplast and Mitochondria Gene Families AT1G07030 32.026 2.11e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00579 - - pvu:PHAVU_002G289600g 1040.02