Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00576 ATGTCCTTCGTATTCAACATTGGCCAAGGGTTACCAGGAAGAGCTCTGGCAAAGGGTCAATCCATTTGGCTCAACAATGCGCATTCCGCTGACTGTAAACTTTTTAGTCGTTCTCTGCTGGCAAAGAGTGCATCCATCGAGACGGTCGTGTGTTTTCCGGTTATGGAAGGGGTTATTGAGCTTGGCACCACTGAACATGTCTCAGAAGATTTCAGTCTAATTGAACGGATCAAAACTTCTTTCTTGAATAATTTGCATGTCAACGATCCTAATAAGTCAGCATTGAAATCAAGGAACCAGGAAGATCTTGCTTATGTAGCATTTGATGATAATGTTGAATCAATTCCAGAAATTGGGTATGACATAGCCAGCAAAACCTCCCCTGATGGTAGTTCAAACGCATTCCAAGCCAATCAACCACTGGATGAAACTTTCATGGTTGAAAGGATAACCAGTGGCACTTCTCAAGTCCAAAGCTGGCAAGTTATGGATGATGAGATAAGTAACTGTGTTCATAACTCCATGAATTCCAGCGACTGCATATCACAAACTTTTGCCAGTCCTGAGAATATTGCTTCTGCACCCAAGTGTAACAACCCTTCTGACCCTTTTGCCCACAACCCAAAAATGACGGTAGTGGATCCTCGAGGTGATGATTGGCATTATCAGAGAGTTCTGTCTGACCTTCTAAAAACCTCTGATCAGTTACTCATGAAAATGCATTCACAAAAGTTTCATCAGGAATCAAGCTTTGTTTGTTGGAGGCCAGGCGGGGCAACGGATTGCCAATGGCCAAGATCAGGAACTTCACAGAAGTTATTGAAGAAGGTATTGTTTGAAGTTCCTCAAATGCACTTGGATGGTCTGCATGAGTCTCAAGAAGAGAATGACTATAAGGAGGGAATGAGACTAGAGACTGATGAAATTGGCATGAACCACGTAATGTCAGAAAGAAGGAGAAGAGCAAAACTGAATGAAAGGTTTTTAACCCTTAGGTCAATGGTCCCTTCAATCAGTAAGGATGACAAAGTTTCAATACTTGATGATGCAATTGAATACCTTAAAAAGCTTGAGAGAAGGATAAAAGAATTGGAAGTTCAGAGAGGGATGACAAATATGGAGCCGGGGACTAGAAGATCACCTCAAGATATGGTAGAAAGAACTTCTGATCATTATTTTAGCAAAAACCACAATGGCAAGAAATCAGTTGCAAAAAAGAGAAAGGTCTGTGGCGTGGATGAGACAGGAAAAGAGATTAATTCAGATGCTTTAAAAGGAAGTTATGCTAATGATATTACTGTGAGAACTAGTGACAATGAAATTGTGATCGAAATGAAGTGCCCCTCAAGAACAGGAAGACTACTAGAAATTATGGAAGCAGTTAATAGTCTCAGTATAGATTTTAATTCGGTTCAGTCAACAGAGGCCGATGGAAATCTTTATCTGACCATTAAATCTGTGTTCACAGGAGCAACTATTGGAACAACCAAAAGAATCAAACAAGCCCTTCAAAAAGTGGCCTCGAAGTTCTGA 1533 0.407 MSFVFNIGQGLPGRALAKGQSIWLNNAHSADCKLFSRSLLAKSASIETVVCFPVMEGVIELGTTEHVSEDFSLIERIKTSFLNNLHVNDPNKSALKSRNQEDLAYVAFDDNVESIPEIGYDIASKTSPDGSSNAFQANQPLDETFMVERITSGTSQVQSWQVMDDEISNCVHNSMNSSDCISQTFASPENIASAPKCNNPSDPFAHNPKMTVVDPRGDDWHYQRVLSDLLKTSDQLLMKMHSQKFHQESSFVCWRPGGATDCQWPRSGTSQKLLKKVLFEVPQMHLDGLHESQEENDYKEGMRLETDEIGMNHVMSERRRRAKLNERFLTLRSMVPSISKDDKVSILDDAIEYLKKLERRIKELEVQRGMTNMEPGTRRSPQDMVERTSDHYFSKNHNGKKSVAKKRKVCGVDETGKEINSDALKGSYANDITVRTSDNEIVIEMKCPSRTGRLLEIMEAVNSLSIDFNSVQSTEADGNLYLTIKSVFTGATIGTTKRIKQALQKVASKF 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00576 510 SMART finulus 314 363 IPR011598 GO:0046983
Viun3g00576 510 Gene3D - 306 372 IPR036638 GO:0046983
Viun3g00576 510 Pfam Helix-loop-helix DNA-binding domain 312 358 IPR011598 GO:0046983
Viun3g00576 510 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 1 81 IPR025610 -
Viun3g00576 510 Coils Coil 347 374 - -
Viun3g00576 510 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 357 IPR011598 GO:0046983
Viun3g00576 510 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 376 IPR036638 GO:0046983
Viun3g00576 510 PANTHER TRANSCRIPTION FACTOR TT8 1 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00576 Viun-Chr3 3548762 3552760 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00576 1 507 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 42.672 5.61e-125 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g00576 bHLH-MYC_N 2.5e-25 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00576 - - gmx:100808167 836.254