Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00575 ATGGTGCCAGAGAACATGAAGAAACAACTTGCTTTGGCTGTGAGAAGCATCCAATGGAGCTATGCAATTCTCTGGACTGATTCAACCACCCAACCCGGGGTGTTGAGATGGGGGGAAGGGTATTACAATGGAGACATTAAGACAAGGAAAACAAGTCAAGGGGTGGAACTTAATTCTGACCAAATAGGGTTGCAGAGGAGTGAGCAGCTGCGAGAGCTATTCAAATCCCTCAAAACTACAGAAATCACCCCACAAAGCAAAAGACCTTCGGCGGCACTGTCCCCAGAAGATCTCACAGATGCTGAGTGGTATTACTTGGTTTGCATGTCCTTCGTATTCAACATTGGCCAAGGGTTACCAGGAAGAGCTCTGGCAAAGGGTCAATCCATTTGGCTCAACAATGCGCATTCCGCTGACTGTAAACTTTTTAGTCGTTCTCTGCTGGCAAAGAGTGCATCCATCGAGACGGTCGTGTGTTTTCCGGTTATGGAAGGGGTTATTGAGCTTGGCACCACTGAACATGTCTCAGAAGATTTCAGTCTAATTGAACGGATCAAAACTTCTTTCTTGAATAATTTGCATGTCAACGATCCTAATAAGTCAGCATTGAAATCAAGGAACCAGGAAGATCTTGCTTATGTAGCATTTGATGATAATGTTGAATCAATTCCAGAAATTGGGTATGACATAGCCAGCAAAACCTCCCCTGATGGTAGTTCAAACGCATTCCAAGCCAATCAACCACTGGATGAAACTTTCATGGTTGAAAGGATAACCAGTGGCACTTCTCAAGTCCAAAGCTGGCAAGTTATGGATGATGAGATAAGTAACTGTGTTCATAACTCCATGAATTCCAGCGACTGCATATCACAAACTTTTGCCAGTCCTGAGAATATTGCTTCTGCACCCAAGTGTAACAACCCTTCTGACCCTTTTGCCCACAACCCAAAAATGACGGTAGTGGATCCTCGAGGTGATGATTGGCATTATCAGAGAGTTCTGTCTGACCTTCTAAAAACCTCTGATCAGTTACTCATGAAAATGCATTCACAAAAGTTTCATCAGGAATCAAGCTTTGTTTGTTGGAGGCCAGGCGGGGCAACGGATTGCCAATGGCCAAGATCAGGAACTTCACAGAAGTTATTGAAGAAGGTATTGTTTGAAGTTCCTCAAATGCACTTGGATGGTCTGCATGAGTCTCAAGAAGAGAATGACTATAAGGAGGGAATGAGACTAGAGACTGATGAAATTGGCATGAACCACGTAATGTCAGAAAGAAGGAGAAGAGCAAAACTGAATGAAAGGTTTTTAACCCTTAGGTCAATGGTCCCTTCAATCAGTAAGGATGACAAAGTTTCAATACTTGATGATGCAATTGAATACCTTAAAAAGCTTGAGAGAAGGATAAAAGAATTGGAAGTTCAGAGAGGGATGACAAATATGGAGCCGGGGACTAGAAGATCACCTCAAGATATGGTAGAAAGAACTTCTGATCATTATTTTAGCAAAAACCACAATGGCAAGAAATCAGTTGCAAAAAAGAGAAAGGTCTGTGGCGTGGATGAGACAGGAAAAGAGATTAATTCAGATGCTTTAAAAGGAAGTTATGCTAATGATATTACTGTGAGAACTAGTGACAATGAAATTGTGATCGAAATGAAGTGCCCCTCAAGAACAGGAAGACTACTAGAAATTATGGAAGCAGTTAATAGTCTCAGTATAGATTTTAATTCGGTTCAGTCAACAGAGGCCGATGGAAATCTTTATCTGACCATTAAATCTGTGTTCACAGGAGCAACTATTGGAACAACCAAAAGAATCAAACAAGCCCTTCAAAAAGTGGCCTCGAAGTTCTGA 1857 0.4184 MVPENMKKQLALAVRSIQWSYAILWTDSTTQPGVLRWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFKSLKTTEITPQSKRPSAALSPEDLTDAEWYYLVCMSFVFNIGQGLPGRALAKGQSIWLNNAHSADCKLFSRSLLAKSASIETVVCFPVMEGVIELGTTEHVSEDFSLIERIKTSFLNNLHVNDPNKSALKSRNQEDLAYVAFDDNVESIPEIGYDIASKTSPDGSSNAFQANQPLDETFMVERITSGTSQVQSWQVMDDEISNCVHNSMNSSDCISQTFASPENIASAPKCNNPSDPFAHNPKMTVVDPRGDDWHYQRVLSDLLKTSDQLLMKMHSQKFHQESSFVCWRPGGATDCQWPRSGTSQKLLKKVLFEVPQMHLDGLHESQEENDYKEGMRLETDEIGMNHVMSERRRRAKLNERFLTLRSMVPSISKDDKVSILDDAIEYLKKLERRIKELEVQRGMTNMEPGTRRSPQDMVERTSDHYFSKNHNGKKSVAKKRKVCGVDETGKEINSDALKGSYANDITVRTSDNEIVIEMKCPSRTGRLLEIMEAVNSLSIDFNSVQSTEADGNLYLTIKSVFTGATIGTTKRIKQALQKVASKF 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00575 618 PANTHER TRANSCRIPTION FACTOR TT8 2 616 - -
Viun3g00575 618 SMART finulus 422 471 IPR011598 GO:0046983
Viun3g00575 618 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 189 IPR025610 -
Viun3g00575 618 Coils Coil 455 482 - -
Viun3g00575 618 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 416 465 IPR011598 GO:0046983
Viun3g00575 618 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 418 484 IPR036638 GO:0046983
Viun3g00575 618 Gene3D - 414 480 IPR036638 GO:0046983
Viun3g00575 618 Pfam Helix-loop-helix DNA-binding domain 420 466 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00575 Viun-Chr3 3548529 3552456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00575 2 615 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 45.802 1.06e-176 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g00575 bHLH-MYC_N 3.6e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00575 - - gmx:100808167 1038.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00575 3 3548529 3552456 Viun3g00575 3 3548529 3552456 ECH