Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00554 ATGGAAGAATGGTCAACATTCTCAAATGGGCCTTCTTTAGATTCCCTTGGAGTTAAAACAGCTGGTGAATTTCTTGGAAATGGTTGTCGTCTTGGAGATGGTCATGTTGATAATGGTGCTCCTCATGGTAAACTTTCGCAAAAATATCTGTTCTATCAACTTTACCCTCTTTATCTGAAGGATAATTGTTCCCAAGCTGGTGCTCGGCCTTTACTGGTTTTGGTTGATGGACAACAGCTCGATTTGTATAAACTCTTCTCCCTTGTGAAGGAAAGGGGTGGATATGCTGAGGTGTCGAAAAATGGATTGTGGGGTTCTGTGACCAAAGAATTGGGTTTGAACCTTGAAGTTTACTCGCCAGTGAAATTAGTGTACGATAAGTATCTGAATGATTTTGAAAGGTGGCTGAAGAAAATTTTTGAAGAGAAGATTTTAAAAAATGGGAATCATGGGTGTGATTGGGGTTTGGAGTGGTTGCCATTGGATATAGAGAAAGAGTTCAGAGGCCTGTTATGTCTAAATACAAAGAACAAAGCCGATGATGAACTTTTCAAGTCAAAATCAAATAAAAAAAAGAAAAACACTGATTTGGTTAACCACAGTAATGGTAATAATCCATTGGACACCAAAGATCAAAATAATAAACCTGAGGATGTCCAACACATTGAAGGTGACAATAATGAAAAATCCAGTAATGGAATTAAGGACAATCCTGCAACCTTGGGTGCAGAATGTGCTGACAAGGAGTGTAACCCTCTCAAACGCAAACGGGATGCATTCTCAGGCATGCTAAACTGGATGAAGAATATTGCAAAACATCCTCTTTATCCTTTAACTCAACCGATACCAAAACCATCAAAGTGGAAGGAGTATAAAGGCCGGGACTTTTTTGGACAATTTCTGAAGGCAAGAAAGCTTCTGTCACTGAGAAAGCATGAAGAACCAAACAGTGGATTGTCTTCTTTGCAGAAGCAGAAGATGCATCCTGCCATGTTCGAGGATCCTGTTGCTCTCGATCGCCTTGCTACAGGAAAATCAAGATGCAGGGAAAGGCTGCCTTCCTCTGTTAAATCTCGGTCATGCTCTTGCTGCAATCCATGTTCTCACAATGGAAATACATTGGCAGAAAATTGTCCTCACGAGAAAACAACTGAAACTATAGATGTATTGACTGAAAAAGAAAACGGTGAATCATCTGGGGACGAGTCTCATGAAAAGCAAGTATCTGTAGGCCCTCGTTTTCAAGCTGAAATCCCTGAATGGACTGGTGTAGCTTCCGATAGTGACTCTAAATGGCTGGGAACACGAGTATGGTCTTGGAAACATGGCACAGAACCTGCTACTACTGAAACAGATGTTGGAAGGGGAAGACAAGAGAAGTGTAGCTGCGAACATCAAGGTTCTGTTGCGTGTGTTAGATTACATATCGCTGAAAATAGGATGAAAGTGAAGCTTGAATTGGGTTCTGAATTTTACCATTGGGGATTTGATCGAATGGGTGAGGAAGTTTCACTTCAATGGACAACTGTAGAAGAAAAGAGATTTAAGGATATCATGAGATCAAATGTTCCCTCTAAAATTAAATATTTTTGGAACAATGTATGCAAATACTTTCCAAACAGGACAAGAAGACAGTTGGTGAGCTATTATTTCAATGTCTTTCTCATTCAACTAAGAACCTATCAGAATCGGGCGACCCCAAAGAATATTGATAGCGATGATGAAGTAGAGTTCGGCTGTTTGAGCAAAGGTTTTGGAATGGAAGCTGTCGAGGGTCCTGGTGATGATGATTTCCTGGAGTGTGCTCTGAGCGAGCAGTACATTGATTTTGATTAG 1836 0.4047 MEEWSTFSNGPSLDSLGVKTAGEFLGNGCRLGDGHVDNGAPHGKLSQKYLFYQLYPLYLKDNCSQAGARPLLVLVDGQQLDLYKLFSLVKERGGYAEVSKNGLWGSVTKELGLNLEVYSPVKLVYDKYLNDFERWLKKIFEEKILKNGNHGCDWGLEWLPLDIEKEFRGLLCLNTKNKADDELFKSKSNKKKKNTDLVNHSNGNNPLDTKDQNNKPEDVQHIEGDNNEKSSNGIKDNPATLGAECADKECNPLKRKRDAFSGMLNWMKNIAKHPLYPLTQPIPKPSKWKEYKGRDFFGQFLKARKLLSLRKHEEPNSGLSSLQKQKMHPAMFEDPVALDRLATGKSRCRERLPSSVKSRSCSCCNPCSHNGNTLAENCPHEKTTETIDVLTEKENGESSGDESHEKQVSVGPRFQAEIPEWTGVASDSDSKWLGTRVWSWKHGTEPATTETDVGRGRQEKCSCEHQGSVACVRLHIAENRMKVKLELGSEFYHWGFDRMGEEVSLQWTTVEEKRFKDIMRSNVPSKIKYFWNNVCKYFPNRTRRQLVSYYFNVFLIQLRTYQNRATPKNIDSDDEVEFGCLSKGFGMEAVEGPGDDDFLECALSEQYIDFD 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00554 611 SMART bright_3 46 138 IPR001606 GO:0003677
Viun3g00554 611 MobiDBLite consensus disorder prediction 185 240 - -
Viun3g00554 611 Pfam ARID/BRIGHT DNA binding domain 59 133 IPR001606 GO:0003677
Viun3g00554 611 CDD SANT 507 554 IPR001005 -
Viun3g00554 611 ProSiteProfiles ARID domain profile. 45 137 IPR001606 GO:0003677
Viun3g00554 611 SMART ELM2_2 408 458 IPR000949 -
Viun3g00554 611 SMART ARID_2 42 133 - -
Viun3g00554 611 Gene3D - 40 147 IPR036431 GO:0003677
Viun3g00554 611 ProSiteProfiles ELM2 domain profile. 406 439 IPR000949 -
Viun3g00554 611 SUPERFAMILY ARID-like 51 137 IPR036431 GO:0003677
Viun3g00554 611 MobiDBLite consensus disorder prediction 211 230 - -
Viun3g00554 611 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 49 588 - -
Viun3g00554 611 CDD ARID 51 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00554 Viun-Chr3 3420246 3426098 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Viun3g00554 ARID 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00554 - - gmx:100819320 967.607