Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00553 ATGGGCGGTTGCTGCTGCTGTTGCTCTTCTAAGGAGACTGTGTTGAGCGCTCCACCTGCCTACTATTATTATCCAAGAGCACCAGAGGAACATGTTCCTCTATCATCTCACCAGGGTGCCGCTTCTGCTTTCTCTGGGCGACTCTTGGTTGATACTAATCTAGATACGTCATCTCCTGATACTTATAGACCTCCTCCTGCTCCTATCCCTTTCAATGTTACGTTTGGTACCACGCAAACTCCACCTGCAGCTCAAGAAATTCATAGTGATAAGAATAATGCACCCTTGCTTTCTACAGATTCTAGTGCTATTCAAGAACCAGTATCTGAAGACAATCATGGGACCCCAGTTAAGATGGAAGAGCTGAAGGAATCAGAATGCAAAGTTCAGACTGATCTAGAGATAGATTCTGCTATGGGTTCTGAAATTGAACTTGCAAAGTCTGGAAAACCTGTAACTTTAGTAGAAGAGGAGGATACATGCCCAATTTGTTTAGAAGAATATGATGCGGAGAATCCAAAACTCGTAACGAATTGTGACCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAAGTTGCCCTGTGTGCGATCAGGTTTCTCCCAAAAATTCTCAATTTCTCATCTATCTTTACATAATTTTGGATATGCCCTTATGA 672 0.4241 MGGCCCCCSSKETVLSAPPAYYYYPRAPEEHVPLSSHQGAASAFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVTFGTTQTPPAAQEIHSDKNNAPLLSTDSSAIQEPVSEDNHGTPVKMEELKESECKVQTDLEIDSAMGSEIELAKSGKPVTLVEEEDTCPICLEEYDAENPKLVTNCDHHFHLACILEWMERSESCPVCDQVSPKNSQFLIYLYIILDMPL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00553 223 FunFam Putative E3 ubiquitin-protein ligase RHB1A 138 205 - -
Viun3g00553 223 Pfam Ring finger domain 159 201 IPR001841 -
Viun3g00553 223 CDD RING-H2_AIRP1-like 157 204 - -
Viun3g00553 223 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Viun3g00553 223 SMART ring_2 161 201 IPR001841 -
Viun3g00553 223 MobiDBLite consensus disorder prediction 92 120 - -
Viun3g00553 223 MobiDBLite consensus disorder prediction 92 109 - -
Viun3g00553 223 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 39 205 - -
Viun3g00553 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 212 IPR013083 -
Viun3g00553 223 SUPERFAMILY RING/U-box 155 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00553 Viun-Chr3 3408790 3411726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00553 1 203 C3H Transcription Factor Family AT5G41350 52.913 3.29e-66 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00553 - - vra:106765380 427.557