Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00552 ATGGGCGGTTGCTGCTGCTGTTGCTCTTCTAAGGAGACTGTGTTGAGCGCTCCACCTGCCTACTATTATTATCCAAGAGCACCAGAGGAACATGTTCCTCTATCATCTCACCAGGGTGCCGCTTCTGCTTTCTCTGGGCGACTCTTGGTTGATACTAATCTAGATACGTCATCTCCTGATACTTATAGACCTCCTCCTGCTCCTATCCCTTTCAATGTTACGTTTGGTACCACGCAAACTCCACCTGCAGCTCAAGAAATTCATAGTGATAAGAATAATGCACCCTTGCTTTCTACAGATTCTAGTGCTATTCAAGAACCAGTATCTGAAGACAATCATGGGACCCCAGTTAAGATGGAAGAGCTGAAGGAATCAGAATGCAAAGTTCAGACTGATCTAGAGATAGATTCTGCTATGGGTTCTGAAATTGAACTTGCAAAGTCTGGAAAACCTGTAACTTTAGTAGAAGAGGAGGATACATGCCCAATTTGTTTAGAAGAATATGATGCGGAGAATCCAAAACTCGTAACGAATTGTGACCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAAGTTGCCCTGTGTGCGATCAGGATTTGGTTTTCAACCCTCCCATTGAATAA 639 0.4335 MGGCCCCCSSKETVLSAPPAYYYYPRAPEEHVPLSSHQGAASAFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVTFGTTQTPPAAQEIHSDKNNAPLLSTDSSAIQEPVSEDNHGTPVKMEELKESECKVQTDLEIDSAMGSEIELAKSGKPVTLVEEEDTCPICLEEYDAENPKLVTNCDHHFHLACILEWMERSESCPVCDQDLVFNPPIE 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00552 212 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Viun3g00552 212 SMART ring_2 161 201 IPR001841 -
Viun3g00552 212 MobiDBLite consensus disorder prediction 92 120 - -
Viun3g00552 212 MobiDBLite consensus disorder prediction 92 109 - -
Viun3g00552 212 FunFam Putative E3 ubiquitin-protein ligase RHB1A 138 206 - -
Viun3g00552 212 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 39 208 - -
Viun3g00552 212 SUPERFAMILY RING/U-box 155 208 - -
Viun3g00552 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 207 IPR013083 -
Viun3g00552 212 CDD RING-H2_AIRP1-like 157 205 - -
Viun3g00552 212 Pfam Ring finger domain 159 201 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00552 Viun-Chr3 3408778 3411726 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00552 1 208 C3H Transcription Factor Family AT5G41350 52.607 7.30e-69 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00552 - - vra:106765380 396.741