Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00548 ATGTCTTCTGATCTCTACTCTTATGACACCACTTTCCACACACATTCAAACTCAGACTATCTCTCCTCTGATGGGGTTGGAGACCTTCCTTTTCTCTCAGATTCTTTTCCTTTCTTCCCCAATTCTCCCTCTAACGTAGCGCACGACAATTCCAATTCCAATTCCAATTCTCTCGACCCTTTTTCCCCATCTTTTTTCTCCTTCTCCCCTCCAAGTTCCCACTTGGAAAGCCTCAGCCTTTACCATGGCAACCGCGTGCAGCCGCTGTCAAATGGCCAGAACGTAGCGAACGAGTTTGGAACTTTCTCAGCTTTCGATGGCTCTGAAGTGAAGACCGAGGAAACCCAATTGGGTGTTGACTGTGTCTACGCTCAACAACTCCTTCCTCACAGTTACAGCGGTGCTGAAAATTTTTCCAGGTACATGCAAAGAAGCTTCAGCAGCAACTCATTTGAAGCAAAACCTGGTTTTCTGTCACAACCTCACACTGATACTCTTGTGGACTCTCCCAAATTTCAAAGGCATGACTTGAGTTCCCCTGAAGATACTCTCTTCACCGGACAAATGAGAAGGGTTTGTAGCACCGGAGATTTGCAGAACATGAAGGAAAATCGCATGTCTCCAACGGAGGCACCGTTGTTGGAGGAATCGAACTTCAAAGTAGGGCGTTACAGTGCGGAAGAGAGAAAAGAAAGAATCTCGAAATACAGAGCCAAGAGAACCCAGAGGAATTTCAACAAGACAATCAAGTATGCATGCCGAAAGACACTAGCAGATAATCGACCACGCATACGTGGCAGATTCGCCCGCAACGACGAAGCCATCGACACTCCCAAGGCTTCATGTTCAACACGAGACGAAGACGATGTTGATTTCTGGATTGAAGAATTACGATTGCATGAAGAACAAGACGATGTAACAGTGGGAGCAGAAGAATATTTGAGAAGCTATGGAGCAACTCAGTTTCAGTATGGTGGCTTTTGA 984 0.4604 MSSDLYSYDTTFHTHSNSDYLSSDGVGDLPFLSDSFPFFPNSPSNVAHDNSNSNSNSLDPFSPSFFSFSPPSSHLESLSLYHGNRVQPLSNGQNVANEFGTFSAFDGSEVKTEETQLGVDCVYAQQLLPHSYSGAENFSRYMQRSFSSNSFEAKPGFLSQPHTDTLVDSPKFQRHDLSSPEDTLFTGQMRRVCSTGDLQNMKENRMSPTEAPLLEESNFKVGRYSAEERKERISKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDEAIDTPKASCSTRDEDDVDFWIEELRLHEEQDDVTVGAEEYLRSYGATQFQYGGF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00548 327 ProSiteProfiles CCT domain profile. 229 271 IPR010402 GO:0005515
Viun3g00548 327 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 48 290 IPR045281 GO:0009909
Viun3g00548 327 Pfam CCT motif 229 271 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00548 Viun-Chr3 3371684 3373801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00548 225 273 C2C2-CO-like Transcription Factor Family AT5G57660 53.061 1.94e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun3g00548 CCT 9.5e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00548 - - gmx:102665661 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02600 2 31882823 31884754 Viun3g00548 3 3371684 3373801 PCT