Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00546 ATGGGTTTCCCTGTGGGCTACACGGAGCTTCTCTTCCCGAAGCTTCTCCTCCAACTCCTCTCCCTCTTGGGCTTCCTCCGGAGGTTCATTTGCGGCGTCCTCCGTTTCATGGGCCTCCACGATTTCCTCGAGCCCGACATTGCTTGGCCCGAAGCCCACACCCGAATGCCAGAATTCGAATCCGTCTCCGCCACGCTTATCCGGGAAATCCTCCCCGTAGTGAAGTTCGGCGACCTCCTGGACCCACCCGAAACCTGCGCCGTCTGTCTCACGGAGTTCGAGAAAAACGATGAGATCAGACGGCTGGCCAATTGTCGACACATATTCCACCGAGGATGTTTGGACCGTTGGATGGGTTACGATCAGAGAACGTGCCCTCTTTGCAGAACACCCTTCATACCAGACGATATGCAAGGTACCTTCATTGAAAGACTCCGGGCTATTTCTGGGATCTCTGAACACCCTCTTCTTCCTGCTTCCTAG 483 0.5528 MGFPVGYTELLFPKLLLQLLSLLGFLRRFICGVLRFMGLHDFLEPDIAWPEAHTRMPEFESVSATLIREILPVVKFGDLLDPPETCAVCLTEFEKNDEIRRLANCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPDDMQGTFIERLRAISGISEHPLLPAS 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00546 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 132 IPR013083 -
Viun3g00546 160 SMART ring_2 86 128 IPR001841 -
Viun3g00546 160 ProSiteProfiles Zinc finger RING-type profile. 86 129 IPR001841 -
Viun3g00546 160 PANTHER RING ZINC FINGER PROTEIN-RELATED 38 138 - -
Viun3g00546 160 Pfam Ring finger domain 85 129 IPR001841 -
Viun3g00546 160 SUPERFAMILY RING/U-box 67 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00546 Viun-Chr3 3347942 3348769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00546 1 160 C3H Transcription Factor Family AT1G63840 54.545 3.09e-55 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00546 K16281 - gmx:100817079 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02603 2 31890287 31891433 Viun3g00546 3 3347942 3348769 PCT