Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00543 ATGATGGCTCGACAATTATGTGAAGAGAAATCCAAGGACATGGGTTCGTCAACCGGGTTGTTCTACCCCGATGTGTCATCGAACAGCCCAACTCTCCAACCCCATCTCATGAACCACATCCAAGGCTTTGTGACCGACCCAGAGATGTTCAACCTCACCACTGGCATGGAGATGATAGGGTTTTCCAAGAATCTCAATCCACACAGTGAAAGCAACGGGGTCATGTGGAAAAGTTTCTTCGCCAAACCAAGTCAACACGCGGGTCCTTCCTCTTCCAAAACTATGAACGAGTCTTCTTGCAATTTTTATAACCAGCATGAGTATAGTAATAAGCAAGACTTCACATCAGGGATTTCTGAAACAAGTAGCGAGAATTTAATAGTCGGTGGCGCCCATGATTCTGCCCCGTGGCAAGAGAACAGGTTAATGCTAGATGATTCTTCCTTAAGGTGCGTGTTCCCCTGTGAAGGTAACGAAAGGCCCAGTCAAGGCCTTTCACTCTCTCTCAGTTCAACCAACCCTTCAAGTATTGGGTTGCAGTCTTTCGAGCTAAGACAAACAAACCATCATCAGCATCTTTCTGATTTTGTTTCAAGAGACGGGTATTTTGGAAAATCGGTCAATGCTCAACAGCAGCAACAAATGTTGCAAGACGGGTACGTGAGTCCTAACAAAGCTGCGAATATTTACCAGGGGCATTTTCTGATCAAGAACTCCAAGTTCTTGGTGCCTGCACAGCTCCTTCTGAACGAGTTTTGTAGTCTGGGAACAAAGGAAAATGATGTGCAAAAGCAGAAGCAGTCTCTGAAGAACAAGGCGTGGGAAGAGGGTAACAACGGTGGTGGTTCCTCAAAGAACCATTCTCTTGGCTCTCTAGAGTTCGTGGAGTTGCAGAAGAGAAAGACAAGGCTGCTATCGATGCTGGAAGAGGTTGATAGAAGATACAAACATTACTGTAACCAAATGAAGGCTGTGGTCTCCTCCTTTGAAGCAGTGGCGGGTAACGGGGCAGCCACAGTTTACTCGGCTTTGGCTCTGAGAGCCATGTCTCGCCATTTTAGGTGTCTGAAAGATGGAATCATGGAACAAATTCAAGCCACCAGAAAAGCTATGGGAGAGAAAGATCCCGTTGCACCAGGCACGACAAGGGGCGAAACACCCAGGCTTAAAATCATTGACCAATCACTCAGACAACAAAGGGCCTTTCAACAGATTAGCATGATGGAAACCCATCCCTGGAGACCTCAACGTGGCCTTCCCGAACGATCCGTTTCGGTTCTTCGGGCTTGGCTTTTCGAGCACTTTCTTCATCCGTACCCAAGTGATGTCGATAAACACATCCTAGCCCGCCAAACCGGTCTCTCCAGAAGTCAGGTTTCGAATTGGTTTATCAACGCGAGGGTGAGGCTGTGGAAGCCGATGGTGGAGGAGATGTACTTGGAAGAAGAGAAGGAGCAGCAAAACGACGTAGCATCGTCGGAGGGAGGAGGCACCGAGGGGGATCAGAAGCCGACGCAGGCTCGGCTGCTCCGAATTGACTCAGAGATGTCGTCGATGGTGAGCAACACGGAGCACAAAAACGACGGCAAGAGCGGGAAAAGCGTCGAAAACGAGAACGAAATGAATGAGAGGAACCATCCGGCGGAGGCGTTCGGGTCGGTGGAGCTTGAGTTTTCGTCATACGTGCAGCAGTCGTCCGGCGTGGTTGGTTACGATGGTGAGAACGGTGGGGGCGTGTCGTTGACGCTAGGGTTACAGCAGCAGGGTGAAAGCGGGGTGAGTTTAGCGTTCCCGCCAGCGACTCAAAGCTCGATGTTCTACCCACGGGACCAGATAGAAGAGTGTCAAACAGTTGAGTACTCTCTTTTGGACGGCGAAGGACAAAACATGCCGTATAGGAATCTCATGGGGACACAATTGCTCCATGATTTGGTATGA 1938 0.4933 MMARQLCEEKSKDMGSSTGLFYPDVSSNSPTLQPHLMNHIQGFVTDPEMFNLTTGMEMIGFSKNLNPHSESNGVMWKSFFAKPSQHAGPSSSKTMNESSCNFYNQHEYSNKQDFTSGISETSSENLIVGGAHDSAPWQENRLMLDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSSIGLQSFELRQTNHHQHLSDFVSRDGYFGKSVNAQQQQQMLQDGYVSPNKAANIYQGHFLIKNSKFLVPAQLLLNEFCSLGTKENDVQKQKQSLKNKAWEEGNNGGGSSKNHSLGSLEFVELQKRKTRLLSMLEEVDRRYKHYCNQMKAVVSSFEAVAGNGAATVYSALALRAMSRHFRCLKDGIMEQIQATRKAMGEKDPVAPGTTRGETPRLKIIDQSLRQQRAFQQISMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEEKEQQNDVASSEGGGTEGDQKPTQARLLRIDSEMSSMVSNTEHKNDGKSGKSVENENEMNERNHPAEAFGSVELEFSSYVQQSSGVVGYDGENGGGVSLTLGLQQQGESGVSLAFPPATQSSMFYPRDQIEECQTVEYSLLDGEGQNMPYRNLMGTQLLHDLV 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00543 645 SMART prehox3 230 362 IPR006563 -
Viun3g00543 645 Pfam Associated with HOX 236 360 IPR006563 -
Viun3g00543 645 SUPERFAMILY Homeodomain-like 414 479 IPR009057 -
Viun3g00543 645 Gene3D - 416 478 - -
Viun3g00543 645 FunFam BEL1-like homeodomain protein 4 416 478 - -
Viun3g00543 645 ProSiteProfiles 'Homeobox' domain profile. 410 473 IPR001356 GO:0003677
Viun3g00543 645 Pfam Homeobox KN domain 430 469 IPR008422 GO:0003677|GO:0006355
Viun3g00543 645 MobiDBLite consensus disorder prediction 482 505 - -
Viun3g00543 645 CDD homeodomain 413 474 IPR001356 GO:0003677
Viun3g00543 645 MobiDBLite consensus disorder prediction 272 286 - -
Viun3g00543 645 MobiDBLite consensus disorder prediction 526 543 - -
Viun3g00543 645 MobiDBLite consensus disorder prediction 517 543 - -
Viun3g00543 645 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 134 502 - -
Viun3g00543 645 SMART HOX_1 413 477 IPR001356 GO:0003677
Viun3g00543 645 MobiDBLite consensus disorder prediction 264 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00543 Viun-Chr3 3314377 3318222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00543 139 645 Homeobox Transcription Factor Family AT5G41410 48.654 4.98e-141 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Viun3g00543 POX 8.8e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00543 - - gmx:100792789 1015.76