Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00535 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAAAGAGGACTTTGGTCTCCCGAGGAAGATGAAAAACTCATCAGATACATCACAACTCATGGATACGGCTGCTGGAGTGAAGTTCCAGAAAAAGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTCGCTTGAGATGGATTAATTATTTGAGACCTGATATTAGGAGAGGCAGGTTTACACCAGAGGAGGAAAAGTTAATTATAAGCCTTCACGGGGTCGTAGGCAACAGATGGGCACACATTGCAAGCCACTTGCCAGGTCGAACGGACAATGAAATAAAGAACTATTGGAACTCATGGATAAAAAAGAAAATAAGAAAGACTTCAGTGTCTTCAACCACTATTGCACAAAGTATCGATCACAATCCTTCCCAGTTCAGCTACAGTTCCAATCTACTTGGCCACTTTTCTTCCAACCTAGATAATCCACAGACAAAACCACCACTTCAAGAAACCTTGTTTTCCTCAACATGCCCTCTGTTCATGTTCGAGACACCTTCACTGGAAGGCCCAGCGACAGACTGCAACAGTGTGCGAGCTGAAAATTTTCAAGATGCGGTGGGGTTGAGCACTGAAACATGGTTGAGCCACCATCAGGTTCAGGCGCTTCCTCCTCTAACAGTGACTGTGGGCTTGGACACCACAAATTATTTGCCACCATTGATAGAGAACGTGGACAACATGGTCCCGATTGAGGTACAACCTTGTACCATGGAGGAGCAAGGAGATATAGCACTGGAGTGCCTGCAGAGGCAAGGTTTAAATGAATGGGTGGAAACGCAGCAGCAATGTCCTAACTTTCTCTTCTGGGACAGCGTTGAAGGACATATTGGTGGGGAAGAACTAGGACCAAATTCGGCAAATGTGGAAGCAAACACACTTTCTCCTTTTCCTTCTTCTTTGGCCAAATATGTGTTTATAGGTCGTGCTCTAATGAGCCAGTCCGGCCCATTAATAGGCCCATTTAATACGAAAAATCGATCAAGTGAGAATTTAGGGTTTATACGCCACAAGGCAGCAAAGATAACAGTGTGGACGCCGAGCTCTGTTTCCCAGCATCCATTTCTTCTTCATTCACCTTCTCACACAATGATTATCCCGGAGAAGAACCGTAAGGAGATCTGCAAGTACCTCTTCCAAGAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATTTGGCGAAGCACCCTGAGATTGATGTGCCTAATCTGCAGGTGATTAAGCTGATGCAGAGTTTCAAATCTCGCGAATACGTGAGGGAGACCTTTGCTTGGATGCATTACTACTGGTTCCTCACTAATGATGGCATAGAGTTTCTCAGAACTTATCTTAACCTTCCTTCCGAAATTGTCCCTGCCACTTTGAAGAAACAGGCCAAGCCACCTGGCAGGCCCTTTGGCGGCCCATCCGGTGATCGCCCTAGGGGCCCACCACGCTTTGAGGGTGAGCGTAGATTTGGTGGTGATCGTGATGGATACCGTGGAGGTCCCCGAGGCGGTGGGGACTTTGGAGGAGACAAGGGAGGAGCTCCTGCTGATTACAGACCCTCTTTTGGGGGTTCTGGCGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCGCCAACCAGTTCTAATCTTCCTTAA 1662 0.4741 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKTSVSSTTIAQSIDHNPSQFSYSSNLLGHFSSNLDNPQTKPPLQETLFSSTCPLFMFETPSLEGPATDCNSVRAENFQDAVGLSTETWLSHHQVQALPPLTVTVGLDTTNYLPPLIENVDNMVPIEVQPCTMEEQGDIALECLQRQGLNEWVETQQQCPNFLFWDSVEGHIGGEELGPNSANVEANTLSPFPSSLAKYVFIGRALMSQSGPLIGPFNTKNRSSENLGFIRHKAAKITVWTPSSVSQHPFLLHSPSHTMIIPEKNRKEICKYLFQEGVCFAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPPGRPFGGPSGDRPRGPPRFEGERRFGGDRDGYRGGPRGGGDFGGDKGGAPADYRPSFGGSGGRPGFGRGSGGFGAPTSSNLP 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00535 553 PANTHER MYB DOMAIN PROTEIN 55 1 157 - -
Viun3g00535 553 CDD SANT 69 112 IPR001005 -
Viun3g00535 553 MobiDBLite consensus disorder prediction 486 506 - -
Viun3g00535 553 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Viun3g00535 553 Gene3D - 68 136 - -
Viun3g00535 553 MobiDBLite consensus disorder prediction 465 553 - -
Viun3g00535 553 Pfam Plectin/S10 domain 377 468 IPR005326 -
Viun3g00535 553 FunFam MYB transcription factor 6 66 - -
Viun3g00535 553 CDD SANT 17 61 IPR001005 -
Viun3g00535 553 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun3g00535 553 SMART sant 66 114 IPR001005 -
Viun3g00535 553 SMART sant 13 63 IPR001005 -
Viun3g00535 553 FunFam 40S ribosomal protein S10 375 478 - -
Viun3g00535 553 Gene3D - 375 478 IPR036388 -
Viun3g00535 553 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun3g00535 553 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun3g00535 553 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun3g00535 553 Gene3D - 6 66 - -
Viun3g00535 553 FunFam Transcription factor MYB26 68 137 - -
Viun3g00535 553 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Viun3g00535 553 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00535 Viun-Chr3 3266978 3277739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00535 1 296 MYB Transcription Factor Family AT1G63910 52.528 2.11e-97 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun3g00535 S10_plectin 9.7e-43 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00535 K09422 K02947 gmx:100803556 696.427