Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00529 ATGGATGAATTTGCGTGCTTGAGGGATTGGGATTTGGAGGCTATTGTGAGAGGAAGCAGTGGTGAAGCCACCGCCATGGACGATCCAAATCCTGATTTTTCTTATTTCTTCTCCGACCAAGACGAGCTTCTTGATAGCTTTCCAGAATTCTCAGAAACCACCAGGGTCCTTGATGATCTCGAAGATCTCTACAAACCTTTCTACCCAGTTTTGCACCCTCTCTCACCTCACACCATCGTTACCACTTCCCTATCCATCCCCATAGAACCCCAACAGGTCAAAGAACTCAAAGCATCGGAAGACAAAGTAGCCCTACAGGGTTTGAAAACTCCCCCAACACCTAAGTGTAAAAAAGGGAAGAAGAACCAGAACAAGAGTGTGGTGAAGCAGGTAACAACAGCAGAAGGTCTGGACGATGCATGGGCATGGCGTAAATATGGACAGAAACCAATAAAGGGTTCTCCGTATCCGAGAAGCTACTATAGGTGCAGCAGTTCCAAAGGGTGTTTGGCGAGGAAACAGGTTGAAAGAAGCCACTTAGATCCTGCAGTTTTTCTGGTTACCTACACTGCTGAACACAGCCATCCCCACCCAACTCGGAGAAACTCTCTTGCTGGGACCACTAGGAAGAACAATTCCCTCATTCCCCCTCCAACAACTCGTAACCACAACACTACTTGTTCCTCCAGGACACCTTTGATGGTGCAATCCATTGAAGAAAAACTTGTAACAAGTGTGCAACAAAGCATGGACTTGAAGAAAGAGGAAGACTTTCTTGAGTGGTTCGATGATGATGGTGCTCAATTTGGTGATGCTTGGATTCCAACCTCAGATCTAGAGAAGCTTATTGGACTTGAATGCCAGCATTTTGCACTGGACGGGGGTTTCACCGATGGTTATGCTCACTCTTGA 912 0.466 MDEFACLRDWDLEAIVRGSSGEATAMDDPNPDFSYFFSDQDELLDSFPEFSETTRVLDDLEDLYKPFYPVLHPLSPHTIVTTSLSIPIEPQQVKELKASEDKVALQGLKTPPTPKCKKGKKNQNKSVVKQVTTAEGLDDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSHLDPAVFLVTYTAEHSHPHPTRRNSLAGTTRKNNSLIPPPTTRNHNTTCSSRTPLMVQSIEEKLVTSVQQSMDLKKEEDFLEWFDDDGAQFGDAWIPTSDLEKLIGLECQHFALDGGFTDGYAHS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00529 303 SMART WRKY_cls 137 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g00529 303 MobiDBLite consensus disorder prediction 200 228 - -
Viun3g00529 303 SUPERFAMILY WRKY DNA-binding domain 131 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g00529 303 Gene3D WRKY domain 121 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g00529 303 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 88 230 IPR044810 GO:0003700
Viun3g00529 303 Pfam WRKY DNA -binding domain 138 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g00529 303 ProSiteProfiles WRKY domain profile. 132 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g00529 303 MobiDBLite consensus disorder prediction 194 228 - -
Viun3g00529 303 FunFam WRKY transcription factor 22 120 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00529 Viun-Chr3 3152806 3154238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00529 1 221 WRKY Transcription Factor Family AT4G23550 50.877 4.93e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun3g00529 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00529 K13426 K13425 gmx:102663255 489.96