Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00518 ATGGAACAGAAAAACATTCTGCTATCGGCTTTGGGTGTTGGGGTGGGTGTTGGAGTGGGGATTGGATTGGCTTCTGGACAAGGCGTTGGAAAATGGGGAGCCAACACTTCTTCCTCAAACGCCATCACTGCTGAGAAGATGGAGCAGGAAATGCTCAGACAAGTTGTTGATGGAAGAGAAAGCAACGTCACTTTTGAGAAATTCCCTTATTACCTCAGTGAGCAGACAAGGGTTTTGCTGACAAGTGTGGCTTATGTCCATTTAAAGCATGCTGAGGTTTCTAAATATACACGGAATCTTGCTCCTGCAAGCAGAACTATTCTGCTCTCAGGGCCAGCAGAGCTTTACCAACAGATGCTTGCCAAGGCTTTAGCTCATTATTTTGAGGCCAAGTTACTGCTGTTAGATTTAACCGACTTTTCGTTGAAGATTCAGAGTAAATATGGTTCTTCCAACAAAGAATCTTCTTTCAAAAGATCCACTTCAGAGTCTACTTTGGAGCGGCTATCTGATCTATTTGGGTCATTTTCAATCTTTTCACAAAGGCAAGAACCTAAAGGAAAAATGCACAGGCCTAGCAGTGTAATGGACCTGCAATCAATGGGAGCCGAAGCATCTTATAATCCTCCACCACTCCGTAGGAATGCTTCTTCCTCTTCAAACATAAGTGGCCTTGCTTCCCAAACCAATGCTACAAATTCAGCTTCTCTGAAGCGCACAACCAGCTGGTCTTTCGACGAAAAACTTCTTATACAGTCTCTTTACAAGGTTCTGGTTTTCGTGTCAAAAACTTATCCCATTGTGCTATATTTGCGTGATGTTGATAAGCTGTTATACAAATGGCAAAGGATATATTACCTGTTCCAGAAAATGTTGAAAAAACTATCTGGATCCATTTTGATTCTTGGTTCACGAGTTATAGATTGTGGAAATGAGTATGAAGAGGTGAATGAAAAACTTGATTCACTCTTCCCATACACCATAGAAATCAGGCCCCCAGAAGATGAGTCACATCTTGTCAGCTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATACAAGTTAAGGATAACAAAATTCATATCATGGAAGTCCTTGCAGCAAACGATCTCGATTGTGATGACCTAGATTCCATATGTGTAGAAGACACAATGGTTCTCAGTAACTATATAGAAGAGATCATTGTGTCAGCAATTTCGTGTCATTTGATGAAAAACAAAGACCCTGAATACAGAAATGGCAAGCTCGTTATTTCTTCCAATAGCTTGTCCCATGCATTGAGTATATTCCACAAGGGGAAATCCAGCAGAGGAGATACACTAAAATTAGAAGATCAAGCTGTAAAATCAGAGAAGCAAAGAGAGGAAGGAACTGATATGAAATCAGAACCGAAGTCTGAAAATGCTGCTCCTGTAAAAAAGGCTGAAGCAGAAACATCAACTTCGGTGGGAAAGGAGGATAGTGAAAAATCAGTTCCTGCACCCAAAGCCCCTGAAGTTCCTCCTGATAATGAGTTTGAGAAGCGAATAAGGCCTGAGGTAATACCAGCAAATGAGATTGGTGTAACATTCTCTGACATTGGTGCCTTGGATGAGACCAAAGAATCCCTTCAAGAACTAGTGATGCTTCCTCTTCGAAGGCCAGACCTTTTCACCGGAGGCCTTCTAAAGCCTTGTAGAGGAATATTGCTGTTTGGGCCTCCTGGCACTGGGAAGACCATGCTGGCAAAGGCCATTGCAAAGGAGGCTGGTGCAAGTTTCATCAATGTTTCCATGTCTACCATCACTTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGCGCTCTATTCACACTTGCTGCCAAGGTCTCCCCAACTATTATATTCGTGGATGAGGTTGATAGCATGCTCGGGCAACGTACCAGAGTTGGGGAGCATGAAGCCATGAGGAAAATAAAGAATGAATTTATGAGCCATTGGGATGGTCTTTTGACAAAGCCAGGGGAGAGAATCCTTGTTCTTGCTGCAACCAATAGGCCATTTGATCTCGATGAAGCTATCATTAGGCGATTTGAAAGAAGAATCATGGTAGGACTACCGTCTGTGGAAAACAGGGAAAAGATTTTGAAGACTCTTTTAGCGAAAGAGAAGGTGGACAACGAACTTGATCTTAAGGAACTTGCAACTATGACAGAAGGATATACTGGAAGTGATCTTAAGAACTTGTGCACAACTGCTGCTTATAGACCTGTTAGAGAGCTAATTCAGCAAGAGAGACTAAAGAGTTTGGATAAAAAGCAGAAAGCTACCAAGAGACAGAATGAAGATGTCCAAGATAGTGAAGGTGTACAAGAAATTGAGCAAGAAATAGTCATTGCCCTTAGGCCGTTGAATATGCAGGATTTCAAAGAGGCCAAGAATCAGGTTGCTGCAAGCTTTGCAGCTGAAGGGGCTGGAATGAGTGAGTTGAAACAGTGGAATGATTTGTACGGAGAAGGGGGATCAAGGAAGCAGCAACAGTTATCTTACTTCCTATGA 2520 0.4226 MEQKNILLSALGVGVGVGVGIGLASGQGVGKWGANTSSSNAITAEKMEQEMLRQVVDGRESNVTFEKFPYYLSEQTRVLLTSVAYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTDFSLKIQSKYGSSNKESSFKRSTSESTLERLSDLFGSFSIFSQRQEPKGKMHRPSSVMDLQSMGAEASYNPPPLRRNASSSSNISGLASQTNATNSASLKRTTSWSFDEKLLIQSLYKVLVFVSKTYPIVLYLRDVDKLLYKWQRIYYLFQKMLKKLSGSILILGSRVIDCGNEYEEVNEKLDSLFPYTIEIRPPEDESHLVSWKSQLEEDMKMIQVKDNKIHIMEVLAANDLDCDDLDSICVEDTMVLSNYIEEIIVSAISCHLMKNKDPEYRNGKLVISSNSLSHALSIFHKGKSSRGDTLKLEDQAVKSEKQREEGTDMKSEPKSENAAPVKKAEAETSTSVGKEDSEKSVPAPKAPEVPPDNEFEKRIRPEVIPANEIGVTFSDIGALDETKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILKTLLAKEKVDNELDLKELATMTEGYTGSDLKNLCTTAAYRPVRELIQQERLKSLDKKQKATKRQNEDVQDSEGVQEIEQEIVIALRPLNMQDFKEAKNQVAASFAAEGAGMSELKQWNDLYGEGGSRKQQQLSYFL 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00518 839 Pfam ATPase family associated with various cellular activities (AAA) 562 692 IPR003959 GO:0005524|GO:0016887
Viun3g00518 839 MobiDBLite consensus disorder prediction 479 493 - -
Viun3g00518 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 354 IPR027417 -
Viun3g00518 839 SMART AAA_5 558 695 IPR003593 GO:0016887
Viun3g00518 839 MobiDBLite consensus disorder prediction 207 227 - -
Viun3g00518 839 Pfam AAA+ lid domain 716 753 IPR041569 -
Viun3g00518 839 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 45 838 - -
Viun3g00518 839 MobiDBLite consensus disorder prediction 440 505 - -
Viun3g00518 839 MobiDBLite consensus disorder prediction 440 472 - -
Viun3g00518 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 806 IPR027417 -
Viun3g00518 839 Gene3D - 694 773 - -
Viun3g00518 839 MobiDBLite consensus disorder prediction 211 227 - -
Viun3g00518 839 Gene3D - 521 693 IPR027417 -
Viun3g00518 839 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 521 696 - -
Viun3g00518 839 Coils Coil 754 774 - -
Viun3g00518 839 ProSitePatterns AAA-protein family signature. 665 684 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00518 Viun-Chr3 3051648 3057258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00518 474 785 Calmodulin-binding Proteins AT3G56690 33.750 6.03e-44 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00518 - - gmx:100807464 1432.16