Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00517 ATGGAACAGAAAAACATTCTGCTATCGGCTTTGGGTGTTGGGGTGGGTGTTGGAGTGGGGATTGGATTGGCTTCTGGACAAGGCGTTGGAAAATGGGGAGCCAACACTTCTTCCTCAAACGCCATCACTGCTGAGAAGATGGAGCAGGAAATGCTCAGACAAGTTGTTGATGGAAGAGAAAGCAACGTCACTTTTGAGAAATTCCCTTATTACCTCAGTGAGCAGACAAGGGTTTTGCTGACAAGTGTGGCTTATGTCCATTTAAAGCATGCTGAGGTTTCTAAATATACACGGAATCTTGCTCCTGCAAGCAGAACTATTCTGCTCTCAGGGCCAGCAGAGCTTTACCAACAGATGCTTGCCAAGGCTTTAGCTCATTATTTTGAGGCCAAGTTACTGCTGTTAGATTTAACCGACTTTTCGTTGAAGATTCAGAGTAAATATGGTTCTTCCAACAAAGAATCTTCTTTCAAAAGATCCACTTCAGAGTCTACTTTGGAGCGGCTATCTGATCTATTTGGGTCATTTTCAATCTTTTCACAAAGGCAAGAACCTAAAGTTGCAGGAAAAATGCACAGGCCTAGCAGTGTAATGGACCTGCAATCAATGGGAGCCGAAGCATCTTATAATCCTCCACCACTCCGTAGGAATGCTTCTTCCTCTTCAAACATAAGTGGCCTTGCTTCCCAAACCAATGCTACAAATTCAGCTTCTCTGAAGCGCACAACCAGCTGGTCTTTCGACGAAAAACTTCTTATACAGTCTCTTTACAAGGTTCTGGTTTTCGTGTCAAAAACTTATCCCATTGTGCTATATTTGCGTGATGTTGATAAGCTGTTATACAAATGGCAAAGGATATATTACCTGTTCCAGAAAATGTTGAAAAAACTATCTGGATCCATTTTGATTCTTGGTTCACGAGTTATAGATTGTGGAAATGAGTATGAAGAGGTGAATGAAAAACTTGATTCACTCTTCCCATACACCATAGAAATCAGGCCCCCAGAAGATGAGTCACATCTTGTCAGCTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATACAAGTTAAGGATAACAAAATTCATATCATGGAAGTCCTTGCAGCAAACGATCTCGATTGTGATGACCTAGATTCCATATGTGTAGAAGACACAATGGTTCTCAGTAACTATATAGAAGAGATCATTGTGTCAGCAATTTCGTGTCATTTGATGAAAAACAAAGACCCTGAATACAGAAATGGCAAGCTCGTTATTTCTTCCAATAGCTTGTCCCATGCATTGAGTATATTCCACAAGGGGAAATCCAGCAGAGGAGATACACTAAAATTAGAAGATCAAGCTGTAAAATCAGAGAAGCAAAGAGAGGAAGGAACTGATATGAAATCAGAACCGAAGTCTGAAAATGCTGCTCCTGTAAAAAAGGCTGAAGCAGAAACATCAACTTCGGTGGGAAAGGAGGATAGTGAAAAATCAGTTCCTGCACCCAAAGCCCCTGAAGTTCCTCCTGATAATGAGTTTGAGAAGCGAATAAGGCCTGAGGTAATACCAGCAAATGAGATTGGTGTAACATTCTCTGACATTGGTGCCTTGGATGAGACCAAAGAATCCCTTCAAGAACTAGTGATGCTTCCTCTTCGAAGGCCAGACCTTTTCACCGGAGGCCTTCTAAAGCCTTGTAGAGGAATATTGCTGTTTGGGCCTCCTGGCACTGGGAAGACCATGCTGGCAAAGGCCATTGCAAAGGAGGCTGGTGCAAGTTTCATCAATGTTTCCATGTCTACCATCACTTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGCGCTCTATTCACACTTGCTGCCAAGGTCTCCCCAACTATTATATTCGTGGATGAGGTTGATAGCATGCTCGGGCAACGTACCAGAGTTGGGGAGCATGAAGCCATGAGGAAAATAAAGAATGAATTTATGAGCCATTGGGATGGTCTTTTGACAAAGCCAGGGGAGAGAATCCTTGTTCTTGCTGCAACCAATAGGCCATTTGATCTCGATGAAGCTATCATTAGGCGATTTGAAAGAAGAATCATGGTAGGACTACCGTCTGTGGAAAACAGGGAAAAGATTTTGAAGACTCTTTTAGCGAAAGAGAAGGTGGACAACGAACTTGATCTTAAGGAACTTGCAACTATGACAGAAGGATATACTGGAAGTGATCTTAAGAACTTGTGCACAACTGCTGCTTATAGACCTGTTAGAGAGCTAATTCAGCAAGAGAGACTAAAGAGTTTGGATAAAAAGCAGAAAGCTACCAAGAGACAGAATGAAGATGTCCAAGATAGTGAAGGTGTACAAGAAATTGAGCAAGAAATAGTCATTGCCCTTAGGCCGTTGAATATGCAGGATTTCAAAGAGGCCAAGAATCAGGTTGCTGCAAGCTTTGCAGCTGAAGGGGCTGGAATGAGTGAGTTGAAACAGTGGAATGATTTGTACGGAGAAGGGGGATCAAGGAAGCAGCAACAGTTATCTTACTTCCTATGA 2526 0.4228 MEQKNILLSALGVGVGVGVGIGLASGQGVGKWGANTSSSNAITAEKMEQEMLRQVVDGRESNVTFEKFPYYLSEQTRVLLTSVAYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTDFSLKIQSKYGSSNKESSFKRSTSESTLERLSDLFGSFSIFSQRQEPKVAGKMHRPSSVMDLQSMGAEASYNPPPLRRNASSSSNISGLASQTNATNSASLKRTTSWSFDEKLLIQSLYKVLVFVSKTYPIVLYLRDVDKLLYKWQRIYYLFQKMLKKLSGSILILGSRVIDCGNEYEEVNEKLDSLFPYTIEIRPPEDESHLVSWKSQLEEDMKMIQVKDNKIHIMEVLAANDLDCDDLDSICVEDTMVLSNYIEEIIVSAISCHLMKNKDPEYRNGKLVISSNSLSHALSIFHKGKSSRGDTLKLEDQAVKSEKQREEGTDMKSEPKSENAAPVKKAEAETSTSVGKEDSEKSVPAPKAPEVPPDNEFEKRIRPEVIPANEIGVTFSDIGALDETKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILKTLLAKEKVDNELDLKELATMTEGYTGSDLKNLCTTAAYRPVRELIQQERLKSLDKKQKATKRQNEDVQDSEGVQEIEQEIVIALRPLNMQDFKEAKNQVAASFAAEGAGMSELKQWNDLYGEGGSRKQQQLSYFL 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00517 841 SMART AAA_5 560 697 IPR003593 GO:0016887
Viun3g00517 841 Pfam AAA+ lid domain 718 755 IPR041569 -
Viun3g00517 841 Gene3D - 696 775 - -
Viun3g00517 841 MobiDBLite consensus disorder prediction 442 507 - -
Viun3g00517 841 MobiDBLite consensus disorder prediction 442 474 - -
Viun3g00517 841 Pfam ATPase family associated with various cellular activities (AAA) 564 694 IPR003959 GO:0005524|GO:0016887
Viun3g00517 841 MobiDBLite consensus disorder prediction 213 229 - -
Viun3g00517 841 Coils Coil 756 776 - -
Viun3g00517 841 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 524 808 IPR027417 -
Viun3g00517 841 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 523 698 - -
Viun3g00517 841 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 356 IPR027417 -
Viun3g00517 841 Gene3D - 523 695 IPR027417 -
Viun3g00517 841 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 45 840 - -
Viun3g00517 841 MobiDBLite consensus disorder prediction 481 495 - -
Viun3g00517 841 ProSitePatterns AAA-protein family signature. 667 686 IPR003960 GO:0005524|GO:0016887
Viun3g00517 841 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00517 Viun-Chr3 3051648 3057258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00517 476 787 Calmodulin-binding Proteins AT3G56690 33.750 5.59e-44 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00517 - - gmx:100807464 1427.15