Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00514 ATGGGTAACTGCAGCAGCAGCCACGGCGGCGGTGCCGCCACCACCACCACCACGTACTCCGACGACCTTCCCCGGCGCAACGGCATCACCGTCCTACCTCCGAACGCGAACCCTTCACCACCACCCCCGAAACCTCAAGCGTCGTCCTCGCTGGGCCGGGTGCTGGGCCGGCCCATGGAGGACGTCCGGTCAATTTACACCTTCGGGCGCGAGCTGGGCCGCGGGCAGTTCGGCGTGACGTACCTGGTGACCCACAAGGCCACGAAGGAGCAATTCGCGTGCAAGTCGATCGCAACGCGCAAGCTCGTGAACCGTGACGACATCGACGACATCCGGCGCGAGGTCCAGATCATGCACCACCTCACCGGCCACCGCAACATCGTGGAGCTCAAGGGCGCCTACGAGGACCGCCACTCCGTCAATCTCATCATGGAGCTCTGCGCTGGCGGCGAGCTCTTCGACCGGATTATCACCAAGGGCCACTACTCCGAGCGCGCCGCCGCCAACTCCTGCCGCCAGATCGTGACGGTGGTGCACAATTGCCACTCCATGGGCGTGATGCACAGGGACTTGAAGCCCGAGAATTTCTTGCTGCTCAACAAGGACGATGATTCCCCTCTCAAGGCCACGGATTTTGGTCTCTCCGTCTTCTTCAAGCCGGGAGATGTGTTTAGAGACCTTGTTGGGAGTGCTTACTATGTTGCTCCTGAGGTGTTGAAAAGAAGTTATGGGCCTGAGGCTGATATTTGGAGTGCTGGGGTTATACTCTACATTCTGCTCTCTGGTGTTCCACCTTTCTGGGCAGAAAATGAACAGGGTATCTTTGATGCTATTCTTCGTGGACATATTGATTTCGCATCGGATCCTTGGCCTTCCATATCAACCAGTGCCAAAGATCTGGTAAAAAAGATGCTACGAGCTGACCCCAAAGAACGACTTTCAGCAGTTGAAGTACTGAATCATCCCTGGATGAGAGTGGATGGAGATGCATCTGATAAGCCTCTTGATATTGCTGTTTTATCCAGAATGAAACAATTCCGAGCAATGAACAAACTAAAAAAAGTAGCCCTGAAGGTTATTGCTGAAAATCTTTCTGAAGAAGAAATTATCGGCTTGAAGGAAATGTTCAAATCCATGGATACAGATAACAGTGGAACAATCACATTTGAGGAGTTGAAAGCTGGTCTCCCAAAACTGGGTAGTAAGCTTTCTGAGTCCGAAGTAAGGCAATTGATGGAAGCGGCTGATGTAGATGGAAATGGAACCATTGATTACATTGAATTTATAACTGCTACCATGCACATGAATAGAATGGAAAGAGAGGATCATCTATATAAAGCCTTTGAATATTTTGACGATGATAAGAGCGGTTACATCACAATGGAAGAATTGGAATCTGCCCTCAAGAAGTATAACATGGGTGATGAGAAAACAATAAAGGAGATCATTGCTGAAGTTGATACAGACAATGATGGAAGAATTAACTATGATGAGTTTGTAGCCATGATGAGGAAAGGCAACCCAGACATAACCCACATAACCCAAAGACGTCGCAAATAA 1560 0.5019 MGNCSSSHGGGAATTTTTYSDDLPRRNGITVLPPNANPSPPPPKPQASSSLGRVLGRPMEDVRSIYTFGRELGRGQFGVTYLVTHKATKEQFACKSIATRKLVNRDDIDDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIITKGHYSERAAANSCRQIVTVVHNCHSMGVMHRDLKPENFLLLNKDDDSPLKATDFGLSVFFKPGDVFRDLVGSAYYVAPEVLKRSYGPEADIWSAGVILYILLSGVPPFWAENEQGIFDAILRGHIDFASDPWPSISTSAKDLVKKMLRADPKERLSAVEVLNHPWMRVDGDASDKPLDIAVLSRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKLSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDDDKSGYITMEELESALKKYNMGDEKTIKEIIAEVDTDNDGRINYDEFVAMMRKGNPDITHITQRRRK 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00514 519 CDD STKc_CAMK 66 323 - -
Viun3g00514 519 Gene3D Phosphorylase Kinase; domain 1 68 151 - -
Viun3g00514 519 FunFam calcium-dependent protein kinase 1 152 331 - -
Viun3g00514 519 ProSiteProfiles Protein kinase domain profile. 66 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00514 519 PANTHER SERINE/THREONINE-PROTEIN KINASE 63 499 - -
Viun3g00514 519 Gene3D - 332 508 - -
Viun3g00514 519 ProSitePatterns Protein kinases ATP-binding region signature. 72 95 IPR017441 GO:0005524
Viun3g00514 519 Pfam Protein kinase domain 66 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00514 519 SUPERFAMILY EF-hand 363 505 IPR011992 -
Viun3g00514 519 SMART serkin_6 66 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00514 519 ProSitePatterns EF-hand calcium-binding domain. 380 392 IPR018247 -
Viun3g00514 519 ProSitePatterns EF-hand calcium-binding domain. 416 428 IPR018247 -
Viun3g00514 519 FunFam Calcium-dependent protein kinase 1 332 507 - -
Viun3g00514 519 FunFam Calcium-dependent protein kinase 1 68 151 - -
Viun3g00514 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Viun3g00514 519 ProSiteProfiles EF-hand calcium-binding domain profile. 474 509 IPR002048 GO:0005509
Viun3g00514 519 SMART efh_1 407 435 IPR002048 GO:0005509
Viun3g00514 519 SMART efh_1 371 399 IPR002048 GO:0005509
Viun3g00514 519 SMART efh_1 443 471 IPR002048 GO:0005509
Viun3g00514 519 SMART efh_1 478 506 IPR002048 GO:0005509
Viun3g00514 519 MobiDBLite consensus disorder prediction 1 54 - -
Viun3g00514 519 MobiDBLite consensus disorder prediction 1 24 - -
Viun3g00514 519 Pfam EF-hand domain pair 442 504 IPR002048 GO:0005509
Viun3g00514 519 Pfam EF-hand domain pair 372 432 IPR002048 GO:0005509
Viun3g00514 519 Gene3D Transferase(Phosphotransferase) domain 1 152 331 - -
Viun3g00514 519 ProSiteProfiles EF-hand calcium-binding domain profile. 367 402 IPR002048 GO:0005509
Viun3g00514 519 ProSitePatterns EF-hand calcium-binding domain. 487 499 IPR018247 -
Viun3g00514 519 ProSiteProfiles EF-hand calcium-binding domain profile. 403 438 IPR002048 GO:0005509
Viun3g00514 519 ProSiteProfiles EF-hand calcium-binding domain profile. 439 473 IPR002048 GO:0005509
Viun3g00514 519 SUPERFAMILY Protein kinase-like (PK-like) 66 325 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00514 Viun-Chr3 3025943 3031697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00514 52 518 EF-hand Containing Proteins AT4G23650 80.942 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Viun3g00514 Pkinase 2.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00514 K13412 - gmx:100777096 960.288