Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00498 ATGAACTTTCTACCCATTTTCTGTTCCATTTCCCTTTTGTGTTTGGTTCTGTGGCAAGCAAATGGTGAGCCTGTTGAAGATAAGGAAGCGTTGCTTGAGTTTGTGAACAAGTTCCCTCCTTCCAGGCCTCTGAATTGGAATGAGAGTTCCCCCATGTGTGCTTCTTGGACTGGTGTGACTTGTAATGAAGACAAGTCCAGAGTAATTGCAATTAGGTTGCCAGGGGTTGGATTTCATGGCACTATTCCACCTGACACTATTAGCCGCCTCACAGCACTGCAAACTTTGAGCCTCAGATCCAATGTGATATCTGGGCATTTCCCTTCTGATTTCTCCAATCTAAAGAACTTGTCTTTCCTCTACCTCCAGTTCAACAATTTGTCTGGGCCTTTGCCTGATTTCTCGGCCTGGAAGAACCTCACTGTCGTCAATTTCTCCAACAACCATTTCAATGGCAGCATTCCTGTTTCCCTCAACATCTTGCCTCAGCTTTCTGGTTTGAACCTTGCAAACAACTCTCTTTCTGGGGAAATTCCTGACCTCAACTTGTCAAGATTGCAGGGGCTGAATCTCTCCAACAACAATTTGCACGGAGCTGTGCCCAAATCTCTGTTGAGGTTTCCCGAGTCTGCATTCTCTGGGAATAACATTTCCTTTGGAACTTTTCCCCCAGTTTCTCCGGCACCTCAACCCGCTTCTGAGCCGGCTTTGAAGGCTAGGAGGCGTAGAAGGCTCAGTGAGGCGGCGCTGTTGGGAGTGGTTGTTGCTGCTGGTGTTTTAGGCCTGGCGGCTTTTGTTTCTTTGACTTTTGTGTGCTGCTCTAGAAGAGGTGATGAAGATGAAGAAACCTTCAGTGGGAAGTTGCACAAGGGAGAAATGTCTCCTGAGAAAGCTGTCTCAAGGAACCAGGATGCAAATAATAAGCTGGTTTTCTTTGAGGGATGTAATTATGCCTTTGATTTGGAGGATTTGTTGAGGGCTTCCGCTGAGGTTCTGGGAAAGGGAACGTTTGGAACTGCCTACAAGGCAATACTAGAAGACGCTACCACGGTTGTTGTGAAGAGATTAAAGGAGGTAGCTGTTGGGAAGAAGGATTTTGAGCAGCATATGGAGATTGTAGGAAGTCTTAAGCATGAGAATGTTGTTGAGCTCAAGGCATATTATTATTCCAAAGATGAGAAACTCATGGTATATGATTATCACAGTCAGGGGAGCATAGCTTCCATTTTGCATGCCAAGAGAGGAGAGGAGAGGGTGGCTTTAGATTGGGATACAAGGTTGAAAATAGCCTTAGGTGCTGCAAGAGGCATTGCTCGTATCCATGTTGAGAACGGTGGGAAGCTGGTACACGGCAACATCAAATCCTCAAACATCTTTCTTAACACCAAACATTATGGATGTGTGTCTGACCTTGGTCTGGCAACCATATCAAGCTCACTGGCCTTACCAATATCACGAGCCGCCGGTTACCGGGCACCGGAAGTGACAGACACGAGAAAAGCAGCACAGCCCTCAGATGTTTACAGTTTTGGTGTGGTGGTGCTAGAGCTTCTGACTGGGAAATCCCCTATCCACACTACTGGTGGTGATGAGATTATCCACCTTGTGAGGTGGGTTCATTCAGTTGTGCGTGAGGAATGGACCGCTGAAGTGTTTGACCTGGAGCTGATGAGATATCCAAACATAGAAGAAGAGATGGTGGAAATGTTGCAGATAGCCATGTCGTGTGTGGTGAGGATGCCTGATCAAAGGCCTAAGATGTCTGAAGTTGTGAAGATGATAGAGAATGTGAGGCAGATTGATGCAGACCAAGCTGAACAACTTAAATTGTCTCAACGTGACAGTGGTAACTCTCCTTCCACTACTACCTCGTACTTCCCCAGAGGAAGTGAATGA 1896 0.4647 MNFLPIFCSISLLCLVLWQANGEPVEDKEALLEFVNKFPPSRPLNWNESSPMCASWTGVTCNEDKSRVIAIRLPGVGFHGTIPPDTISRLTALQTLSLRSNVISGHFPSDFSNLKNLSFLYLQFNNLSGPLPDFSAWKNLTVVNFSNNHFNGSIPVSLNILPQLSGLNLANNSLSGEIPDLNLSRLQGLNLSNNNLHGAVPKSLLRFPESAFSGNNISFGTFPPVSPAPQPASEPALKARRRRRLSEAALLGVVVAAGVLGLAAFVSLTFVCCSRRGDEDEETFSGKLHKGEMSPEKAVSRNQDANNKLVFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKEVAVGKKDFEQHMEIVGSLKHENVVELKAYYYSKDEKLMVYDYHSQGSIASILHAKRGEERVALDWDTRLKIALGAARGIARIHVENGGKLVHGNIKSSNIFLNTKHYGCVSDLGLATISSSLALPISRAAGYRAPEVTDTRKAAQPSDVYSFGVVVLELLTGKSPIHTTGGDEIIHLVRWVHSVVREEWTAEVFDLELMRYPNIEEEMVEMLQIAMSCVVRMPDQRPKMSEVVKMIENVRQIDADQAEQLKLSQRDSGNSPSTTTSYFPRGSE 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00498 631 Gene3D Ribonuclease Inhibitor 26 135 IPR032675 -
Viun3g00498 631 Gene3D Transferase(Phosphotransferase) domain 1 402 618 - -
Viun3g00498 631 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Viun3g00498 631 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524
Viun3g00498 631 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Viun3g00498 631 SUPERFAMILY L domain-like 38 206 - -
Viun3g00498 631 PANTHER OS05G0588300 PROTEIN 6 607 - -
Viun3g00498 631 FunFam pollen receptor-like kinase 1 295 400 - -
Viun3g00498 631 ProSiteProfiles Protein kinase domain profile. 326 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00498 631 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 401 608 - -
Viun3g00498 631 Pfam Leucine rich repeat 81 127 IPR001611 GO:0005515
Viun3g00498 631 Gene3D Ribonuclease Inhibitor 136 225 IPR032675 -
Viun3g00498 631 Pfam Protein kinase domain 329 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00498 631 Gene3D Phosphorylase Kinase; domain 1 292 400 - -
Viun3g00498 631 MobiDBLite consensus disorder prediction 608 631 - -
Viun3g00498 631 FunFam Probable inactive receptor kinase RLK902 24 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00498 Viun-Chr3 2937403 2941378 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00498 16 624 Receptor kinase-like Gene Family AT4G23740 65.378 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun3g00498 Pkinase 7.5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00498 - - gmx:100804799 1092.03