Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00496 ATGGCTTCATCGCCCATCAAGCAAACACAACACCTTAACCGCACCACACTCCTCCTCCAAGAACACACCCTTTCGAAAAACCATCACCATCCCAAACTCGTCAGAATACGTGTCACCGACGCCGACGCCACGGACTCCTCCAGCGACGACGACCAGCCCTCCGTGTCCTCCACGCGCCGCCGAGTCAAAAGCTTCGTCAACGAGATTACCATCCATGGCGCCCATGGCGCTGCCGGAGTAAAAGTTCTTTCCAGGAAAAGAAAGGTAAAGTCAGGCGGCGCGCGGCGGACGGGGACGAGGAAGTTCCGCGGAGTGAGGCAGCGGCCGTGGGGGAAGTGGGCGGCGGAGATAAGGGACCCGTCGCGCCGCGTGCGGCTGTGGCTGGGCACCTACGACACCGCCGAGGAAGCCGCCATTGTGTACGATAACGCCGCCATTCAGCTGCGTGGCGCCGACGCGCTCACCAATTTCATAACGCCGCCGGCGGAGGGCGGAAAAAGCGGTTGCTGCTCCGGCGAGGAGTCGCCCAACGAGGAGCTGCGTTCCCCCACTTCGGTTCTTCGGTGCTGTTGGGGTTCCGAGGAAGCTGAGTCGGTAACCGCAAACGAAGCGGCTGGTCCGGCGAGCGAGTGCGAACATTCATGGTTGTCGGAGGACAGTAAGTTGAAAGATGAGTCGGTGTTTGGTATTCCTGAGGACGTGGTATTCGGATTTGAAAGCACGTTGGATATGTTTGACGAGGAGTGCGTTAACAACGTTGCAGAGAGCAGTGGTATATTCCTGGGCGAAGAATTTGATTTGTCTGGATGCTTTGTTAGCGAGAAAGAGAATTTAGATTTGGGTTTTGGGTTTACGAGTTGGCAAAGAGAGTGCGATAATTTCCAAGACATTGGGGATTTGTTTGTTTGGGATCCTCTTGTCGCTCTTTGA 930 0.5634 MASSPIKQTQHLNRTTLLLQEHTLSKNHHHPKLVRIRVTDADATDSSSDDDQPSVSSTRRRVKSFVNEITIHGAHGAAGVKVLSRKRKVKSGGARRTGTRKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFITPPAEGGKSGCCSGEESPNEELRSPTSVLRCCWGSEEAESVTANEAAGPASECEHSWLSEDSKLKDESVFGIPEDVVFGFESTLDMFDEECVNNVAESSGIFLGEEFDLSGCFVSEKENLDLGFGFTSWQRECDNFQDIGDLFVWDPLVAL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00496 309 CDD AP2 101 157 IPR001471 GO:0003700|GO:0006355
Viun3g00496 309 Gene3D AP2/ERF domain 100 159 IPR036955 GO:0003700|GO:0006355
Viun3g00496 309 MobiDBLite consensus disorder prediction 39 60 - -
Viun3g00496 309 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Viun3g00496 309 SUPERFAMILY DNA-binding domain 101 157 IPR016177 GO:0003677
Viun3g00496 309 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 198 - -
Viun3g00496 309 MobiDBLite consensus disorder prediction 86 105 - -
Viun3g00496 309 FunFam Ethylene-responsive transcription factor 2 100 159 - -
Viun3g00496 309 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Viun3g00496 309 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Viun3g00496 309 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
Viun3g00496 309 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00496 Viun-Chr3 2929408 2930835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00496 1 309 AP2-EREBP Transcription Factor Family AT4G23750 39.714 2.94e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun3g00496 AP2 3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00496 - - gmx:100813992 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02651 2 32158834 32160854 Viun3g00496 3 2929408 2930835 PCT