Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00486 ATGGGTGACACAGTTGTTCCGGTAGCCACAAAGAGGGGGAGGGGCAGAAAGGCCCTGAAGGAGAAAATCCCATCAACAAACGAGGTCAACATTATCGCCGGAAAGGTTTCTGAGTCTCCGGCGAGTCCAATTTCAGCCTCGTTGAAACAAGATTCCAAGAAGCAGCAATCTTTCGAGAAAGAATTGCTCGAGATGCAGGAAATGTTGCAGCAGATGCGCCTCGAAAAGGAGAAGACCGAAGAGCTTCTGAAGGTTAAAGACGAGGCTCTGAAGCAGAAGGACGCAGAGCTCGAAAACCGTGGCCGTGAACAAGAGAAGCTTCAAGTTGAGCTGAAAAAACTGCAGAAATTGAAGGAGTTTAAACCAACTATGAATTTGCCTGTGATGAAAGATAATGAAACAAAGAAGGACAAGAAGAAGAAAACAGGCTCTGAGAAGAAAAGGCCTTCCCCACCTTATATTTTGTGGCTGAAAGATCAATGGAATGAGATAAAAAAGACGAACCCAGAGGCAGAATTTAAGGAAACTTCTAACATGTTGGGGGCTAAATGGAAGACTGTGAGTGCAGAGGAGAAGAAGCCTTATGAGGAGAAATATCATGCTGAGAAAGAAGCTTATCTGCAAGTGATTGCCAAAGAAAAGCGTGAGAGTGAGGCAATGAGGTTGTTTGAAGAGGAGCAGAAACAGAGGACTGCCATGGAATTGCTTGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGACACCAAGAAGAAGAACAAGAAAGAGAAGGATCCTTTGAAACCAAAGCACCCCATGTCTGCTTATTTCTTGTTCACCAACGATAGGCGTGCAGCTCTTATTGCCGAAAACAAAAATTTCTTGGAGGTTCCTAAGATCACAGCCGAAGAGTGGAAAAACATGACAGAGGAACAAAGGAGACCCTATGAAGAGATGGCAAAGAAGAACAAGGAGAAATATGCTTTGGAAATGGAGGCTTATAAGCAGAAGAAAAATGACGAGGCTGCACATCTCATGAAGGAGGAGGAGGAGCATATGAAACTTCAGAAACAAGAAGCCTTGCAACTGCTGAAGAAGAAGGAGAAAACTGATAACATAATCAAGAAAACAAAACAGAATCGTCAGAAGAAGAAACAGAACAAGGAAGACAAGAATTCTGATCCAAACAGGCCTAAGAGGCCTCCATCATCGTTCATCCTATTCGGCAAAGAAGCAAGGAAAACTTTACAAGATGAAAGACCAGGAATCAACACATCAACCCTTAGTGCACTTGTCTCGTTGAAGTGGAAGGAACTGAGTGAGGAAGATAGGCAATTCTGGAATAGCCAAGCATCTGATGCAATGGACGCGTACAAGAAGGAGATGGAGGAATACAACAAATCTCTTTCTGCAGTTGCAAACCAGGAGCTGAAAACTGAAGAATAA 1428 0.4328 MGDTVVPVATKRGRGRKALKEKIPSTNEVNIIAGKVSESPASPISASLKQDSKKQQSFEKELLEMQEMLQQMRLEKEKTEELLKVKDEALKQKDAELENRGREQEKLQVELKKLQKLKEFKPTMNLPVMKDNETKKDKKKKTGSEKKRPSPPYILWLKDQWNEIKKTNPEAEFKETSNMLGAKWKTVSAEEKKPYEEKYHAEKEAYLQVIAKEKRESEAMRLFEEEQKQRTAMELLEQYMQFKQEAEKDTKKKNKKEKDPLKPKHPMSAYFLFTNDRRAALIAENKNFLEVPKITAEEWKNMTEEQRRPYEEMAKKNKEKYALEMEAYKQKKNDEAAHLMKEEEEHMKLQKQEALQLLKKKEKTDNIIKKTKQNRQKKKQNKEDKNSDPNRPKRPPSSFILFGKEARKTLQDERPGINTSTLSALVSLKWKELSEEDRQFWNSQASDAMDAYKKEMEEYNKSLSAVANQELKTEE 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00486 475 Coils Coil 311 388 - -
Viun3g00486 475 Coils Coil 97 117 - -
Viun3g00486 475 MobiDBLite consensus disorder prediction 241 264 - -
Viun3g00486 475 Pfam HMG (high mobility group) box 147 208 IPR009071 -
Viun3g00486 475 Pfam HMG (high mobility group) box 263 329 IPR009071 -
Viun3g00486 475 Pfam HMG (high mobility group) box 392 460 IPR009071 -
Viun3g00486 475 Coils Coil 225 252 - -
Viun3g00486 475 Gene3D High mobility group box domain 250 330 IPR036910 -
Viun3g00486 475 Gene3D High mobility group box domain 130 249 IPR036910 -
Viun3g00486 475 Gene3D High mobility group box domain 372 472 IPR036910 -
Viun3g00486 475 Coils Coil 442 469 - -
Viun3g00486 475 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 468 IPR044601 GO:0003677
Viun3g00486 475 MobiDBLite consensus disorder prediction 340 391 - -
Viun3g00486 475 SUPERFAMILY HMG-box 251 336 IPR036910 -
Viun3g00486 475 MobiDBLite consensus disorder prediction 130 147 - -
Viun3g00486 475 MobiDBLite consensus disorder prediction 121 152 - -
Viun3g00486 475 Coils Coil 55 89 - -
Viun3g00486 475 CDD HMG-box_AtHMGB6-like_rpt1 148 214 - -
Viun3g00486 475 SUPERFAMILY HMG-box 387 466 IPR036910 -
Viun3g00486 475 MobiDBLite consensus disorder prediction 37 57 - -
Viun3g00486 475 MobiDBLite consensus disorder prediction 340 402 - -
Viun3g00486 475 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 146 214 IPR009071 -
Viun3g00486 475 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 263 329 IPR009071 -
Viun3g00486 475 SMART hmgende2 391 461 IPR009071 -
Viun3g00486 475 SMART hmgende2 145 215 IPR009071 -
Viun3g00486 475 SMART hmgende2 262 330 IPR009071 -
Viun3g00486 475 SUPERFAMILY HMG-box 134 209 IPR036910 -
Viun3g00486 475 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 392 460 IPR009071 -
Viun3g00486 475 MobiDBLite consensus disorder prediction 241 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00486 Viun-Chr3 2874124 2876676 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Viun3g00486 HMG_box 7.5e-16 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00486 K09273 - gmx:100783033 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00486 3 2874124 2876676 Viun3g00486 3 2874124 2876676 ECH