Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00463 ATGGCTACCTCACTCATACTATGTTCTTTCTGTCTCCTCCTTTTCCATCTCCAAACCACAAGAGCCAACAACAACCAACACCCTAACTGTGACACCTTCAGATGCGGCGGTGTAGACATTCTCTTCCCTTTCGGTTTGAAACAATCCAACCAAGATCCTCGCTGCAGCTATTTCCCAGTTCCAAGCTTCCAACTTTCTTGCATCAACCGCACACAAACAGTTATAGACATCCCAGGTTTCGGGAACCTCGTCGTCAAAAACATCGACTACGACTCCCAAAGCATCCAAGTCAACGACCCCAATGGATGTCTCCCAAAACGGTTCTTACACAACTGGAACCTTTCGGGTTCACCTTTTATTTTGAACCCCAGGATTTATGGATCGTCTCCCTTCAACCTCACTTTCATGCGTTGCCCCTCAAACGTCACGGGCTCGTCTCAGTTCCCTCCGTTAATGCCGATTTCGTGCCTTAGCGACAACAACCGAAACTATTCGGTGATAGCTTCGTGGTCGCAACCTATTGTGTCGTCAACGATGATGCCGGAACTGTGTCAAGTAATGTCTCATTCTCTTGTTCCTCTCCCTGTGTTGGACATGCCCATGTGGCCCTTCTGGCCCGATCTCAACACAGACATTGAATTGGTGTGGACCGAACCCAGGTGCGGCGATTGTGCACTCAGTGGTCAAGTTTGTGGGTTCTCTGATAAAAAAAATCAAAGTCTTCGAGTTGGGTGCTTCCCTGGGGACTCCGGCAAAGGTCTTTCGAGGAGTGCAAAATACGGGTTAACCATTGGAGTGGGAATACCAGGTCTGTTATGCTTAATCGGGATTTCGTGCTTTGTCTGCGGCAAGTTTAGGAGGCTGAGCCACCGTCGACGTGGCACGCATCTTCCCATGAGCATTTCCCTGCAACCCGTTCCTTTTGCGGCGGGTCTTGACGGTGCCACCATTGAAAAGTACCCGAAAACTCTGATCGGAGAGAGTGGTCGGTTATTGAAGCCCAGCGACAACACCTGCTCAATCTGCCTCTCAGAATATGAACCCAAAGAGACGCTAAGGAGCATTCCGGAATGTGACCACTATTTTCACGCAGATTGCATCGACGAGTGGCTCAGGTTGAACGCCACCTGCCCCCTCTGCCGGAAATCCCCGGAAACATCCACGGCTTCCTTTTCTTCTTCCTCTCCCGCTTCCTCCTCCTTCTCCTCTCCACAATAG 1218 0.5033 MATSLILCSFCLLLFHLQTTRANNNQHPNCDTFRCGGVDILFPFGLKQSNQDPRCSYFPVPSFQLSCINRTQTVIDIPGFGNLVVKNIDYDSQSIQVNDPNGCLPKRFLHNWNLSGSPFILNPRIYGSSPFNLTFMRCPSNVTGSSQFPPLMPISCLSDNNRNYSVIASWSQPIVSSTMMPELCQVMSHSLVPLPVLDMPMWPFWPDLNTDIELVWTEPRCGDCALSGQVCGFSDKKNQSLRVGCFPGDSGKGLSRSAKYGLTIGVGIPGLLCLIGISCFVCGKFRRLSHRRRGTHLPMSISLQPVPFAAGLDGATIEKYPKTLIGESGRLLKPSDNTCSICLSEYEPKETLRSIPECDHYFHADCIDEWLRLNATCPLCRKSPETSTASFSSSSPASSSFSSPQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00463 405 MobiDBLite consensus disorder prediction 385 405 - -
Viun3g00463 405 SMART ring_2 339 380 IPR001841 -
Viun3g00463 405 Pfam Wall-associated receptor kinase galacturonan-binding 30 99 IPR025287 GO:0030247
Viun3g00463 405 SUPERFAMILY RING/U-box 332 386 - -
Viun3g00463 405 ProSiteProfiles Zinc finger RING-type profile. 339 381 IPR001841 -
Viun3g00463 405 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 384 IPR046948 -
Viun3g00463 405 CDD RING-H2_EL5-like 339 381 - -
Viun3g00463 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 386 IPR013083 -
Viun3g00463 405 Pfam Ring finger domain 337 381 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00463 Viun-Chr3 2771042 2773477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00463 27 384 C3H Transcription Factor Family AT2G46495 34.699 1.04e-50 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00463 - - gmx:100810240 585.104