Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00447 ATGCTGCTTTTTCTTCATTGCTTTAGTATAACTCTTCAGGTATATGATACCATTGGAAACAACAAAGTTGAAGATGATTCACTCCTCAGAGATGATGATGACTGGTCCATCGAAGGGAAGAATAACACACTGCAATTTCCCTCATACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGCGATGACTGCAAGGTTCGTAATGGGTTGGCTACTGTTGAAGGAGATTCTGATCTTGATACATCAATAGCATGTGATTCTTGTGACATATGGTATCATGCATTCTGTGTGGGATTTGATACCGAAAGTACATCAGACAGTACATGGTTATGCCCCAGATGTGTAGCAGATTATGTTTCTAAGGGAGCATCTAATTCAATGGAGAGGACAACCGTGGAATGTAATGCAGACAATAGTAACAGTGAATGTCATGCTAAGGATTCCTTTTCAGGAAAAGTGTCTGTCTCTGTTGCTGATACAGGAGAAACAGCTGTTGTTGTCTCGATGGTTGACAGAACAAAATGGGTTCCAGCAACAAGTGAGAAAAGCCTATTGCCTTTAGAAGTTGATGCGGATCCAATGAGTGAATCATGTATTTTAATGTCTGACATAAATGATCAGCAAAGTGGCGAAATGAAGACAATTTCATTACCGATCATGGAAGAAGAACTGGAACTGTCTTTATCAAACAATAGTGATTTAAAGAAAATTGCCAGTGGAACAATGAATGAACCCGGTGGCTTGGATGGAACCAAGTTATTTGATGAGTCCCATACCAAAACTAGTCCATCCAGAATTGAATCTGATATGGGTCTTGATCTTGGTTTGTCAGTGGGCACTTTTTTACCTGTTGATAATGCAGAAAAGAGTGAACCAAAAGATCAAGAACCTGGTGTCCCAGGCTTGACTTCTGAAGAATGTTTTTCGAGAGGAGATGAAATTGAAGTCAATGCTTGTAAGGACAATGCCAGAGTGGTTGGTGGAAAGAGAAAGCATGCTGATTACAGTAATGGGCAAGTTCATATAAAGGCTGAGGATGGAGATGCCAAGCCTGAACTTCCTGAGGAAGTTGTGCCAAAGAAAAGTAAAGCTACTGACAGCCAAATGAGTAACACTGATGACACAGCCAATGATCATCTTTCAGAAAACGGTCCGAAGCACCCTGCTTTAAACGATTCTCCGACAAAGGCAACTGTTACACCAGATATAATGAATATAGTTAAAGGGACAGTCCGAAGGCTTTCCAAGGGACATACTAGTACTAATGCTTGTGACCAGTCATCTGAAAACAAAGGAAATATGGCTGGGTTGAGGGTTAAAAAGATCATGAAGAGAAATTCTGAGGATAGAGAATCATCCTTGTTAGTTCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATCCTCTATAAACTTCGAGGATAACCATTTTGATCCCAAGCTTCTTGAAGCATTTAGGACTGCTATAACAGGGCCTAAAACTGAACTTGTAAACAAGTTATCCCCTGCAGCTATAAAGGCAAAGAAGTCAATGTTGCAGAAAGGCAAAGTGCGTGAAAATTTAACAAAGAAAATTTTTGGGAATTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTCTGGAAATATCGTTGCATGAGAGCTACGAAGCCTGAAAAGATTGAAACATTAAAATCAGTTCTTGATTTACTAAGAAAAGGTTCGGATGGTACAGAATCAAAGCAAGCTTCTGAATGTCAAACCAAGGATCCTATACTTTCTAGGTTGTATTTAGCGGATACATCTGTTTTCCCCCGCAAAGAGGATGTAAAACCTCTCTCTGTCCTTAAAACTGTGGCTAACTCTGAGCAAACCAAACAAAACAATCCATCAGAGAAAGTACCAAATCCATCCGGTAACAATACTATTAAAGCAACAGATGTAAACAATCTCTTATCAAAGATGAGTTTTGTGTCATCTGAAAAAAACGTAGACAAGAAGATTGTACATGGCCCAGTTGGCGATAATTCAACTTCTGGTAAAATACGTTTAAACAATTACTCAGAAAGGACGCCAGTCTCGTCAGTTGGTTCGAAAACTGGCACCAAGGAGTTAGGCCAAAAATCTGGTTGCATGAAGAATGATAAAAAGAAATGGGCCTTGGAGGTCCTTGCGAGGAAAACAGCTACAACCAGCGGGGGAAACACAGCAAATGGAAATCAGGAAGACAATGCAGTTTTTAAAGGAAATTATCCTTTACTTGCCCAACTGCCAAGTGATATGAGACCGGTATTGGCACCTTCTCGACATAATAAAATTCCTATATCAGTTAGGCAGACGCAGCTTTACCGCCTAACCGAGCGCTTATTGAGGAACACAAATCTGTCCGTGATCCGCAGGACTGGCATTACAGAATTAGCTGTTGCAGATGCAATTAATATTGAAAAAGAGGTTGCTGACAGATCAAATAGCAAGCTTGTGTATTTGAACCTTTGTTCACAGGAGCTCTTGCATCGCACAAATAACACAAAATCTGATGTAGCCACAGATACAACTCCAACAGCCTCATCAGCAATGCTTACTGATCAACAATCGGAAATAAATACGGAAGATCTTTCAACTGACCCTGCAGTTGAAACGGCCTTGAAAAATGCTGGTCTGCTGTCTGACTCCCCACCTAGCAGTCCACATGAGAACATAGAAACATGTAATGGTGACATGTCGGGGCCCGATAATATACTTGAACTGGATTCGAATCCTGATCTGGATATTTATGGTGATTTTGAGTATGATTTAGGAGACGAAGATTATATTGGTGCTAGTGTTACACAGGTTTCAAAACCAAAACAAGAGCAAAATGAGTCAAAAGTGAAACTTGTTTTCTCCACCACGAACTTGAAAAAGTCAGATATCGCTTTGGATTGTGCTGACTGTGAGGGACCTGAAAGAAATGAAGTGCCAGGAGAGGCCTCCTGCTCGCCGAATTGTCACAATGATGCAGATCATAGGGATAGGGCTTCTGTTTCTTCAGAGCTCCTACCCTCTGAGAGTGCTATTGAGCCACTTGACAAAGAATTTGAAGAATTATTATACGGCCCAGACAAAGAACCCCTCATAAAAAAATTTCCAGCTGGTGAATCAATATCATTACATGGAGATGGCAAGACAGAAACTCTAAGCGTGGCCAATGACTACCATATTGATAAACAGCATGCTTTGGATAATAAAGTAAAAGCTTCAGAACAGGGGAATGAGAATCTCACAGAAAAAGTTTATGATACTACCATCACCGACCAGTCTTCCAATATATCTGAAGCCGGTGAAAGTTTCCAACGGAAGGAAGAGAAATCTGATGTCACTGCTAAGCAGATTGACTCTGTAAATCATATAACTAAAAAGGTAGAAGCTTACATCAAGGAGCACATCAGACCACTGTGCAAGAGTGGAGTAATCACGGCTGACCAATACAGGTGGGCTGTTGCAAAAACAACTGAGAAGGTAATGAAGTATCATTGCAAAGCAAAGAATGCGAATTTTCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCAGAGCAGTATGCCGAAGCAGCCCAACAGAACAAAAAAAATTGA 3618 0.4038 MLLFLHCFSITLQVYDTIGNNKVEDDSLLRDDDDWSIEGKNNTLQFPSYYIDENAVICLDGDDCKVRNGLATVEGDSDLDTSIACDSCDIWYHAFCVGFDTESTSDSTWLCPRCVADYVSKGASNSMERTTVECNADNSNSECHAKDSFSGKVSVSVADTGETAVVVSMVDRTKWVPATSEKSLLPLEVDADPMSESCILMSDINDQQSGEMKTISLPIMEEELELSLSNNSDLKKIASGTMNEPGGLDGTKLFDESHTKTSPSRIESDMGLDLGLSVGTFLPVDNAEKSEPKDQEPGVPGLTSEECFSRGDEIEVNACKDNARVVGGKRKHADYSNGQVHIKAEDGDAKPELPEEVVPKKSKATDSQMSNTDDTANDHLSENGPKHPALNDSPTKATVTPDIMNIVKGTVRRLSKGHTSTNACDQSSENKGNMAGLRVKKIMKRNSEDRESSLLVQNLRKEIREAVRNKSSINFEDNHFDPKLLEAFRTAITGPKTELVNKLSPAAIKAKKSMLQKGKVRENLTKKIFGNSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKGSDGTESKQASECQTKDPILSRLYLADTSVFPRKEDVKPLSVLKTVANSEQTKQNNPSEKVPNPSGNNTIKATDVNNLLSKMSFVSSEKNVDKKIVHGPVGDNSTSGKIRLNNYSERTPVSSVGSKTGTKELGQKSGCMKNDKKKWALEVLARKTATTSGGNTANGNQEDNAVFKGNYPLLAQLPSDMRPVLAPSRHNKIPISVRQTQLYRLTERLLRNTNLSVIRRTGITELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRTNNTKSDVATDTTPTASSAMLTDQQSEINTEDLSTDPAVETALKNAGLLSDSPPSSPHENIETCNGDMSGPDNILELDSNPDLDIYGDFEYDLGDEDYIGASVTQVSKPKQEQNESKVKLVFSTTNLKKSDIALDCADCEGPERNEVPGEASCSPNCHNDADHRDRASVSSELLPSESAIEPLDKEFEELLYGPDKEPLIKKFPAGESISLHGDGKTETLSVANDYHIDKQHALDNKVKASEQGNENLTEKVYDTTITDQSSNISEAGESFQRKEEKSDVTAKQIDSVNHITKKVEAYIKEHIRPLCKSGVITADQYRWAVAKTTEKVMKYHCKAKNANFLIKEGEKVKKLAEQYAEAAQQNKKN 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00447 1205 MobiDBLite consensus disorder prediction 691 711 - -
Viun3g00447 1205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 119 IPR013083 -
Viun3g00447 1205 Pfam PHD-finger 78 115 IPR019787 -
Viun3g00447 1205 MobiDBLite consensus disorder prediction 286 305 - -
Viun3g00447 1205 MobiDBLite consensus disorder prediction 620 644 - -
Viun3g00447 1205 ProSiteProfiles Zinc finger PHD-type profile. 55 117 IPR019787 -
Viun3g00447 1205 MobiDBLite consensus disorder prediction 691 708 - -
Viun3g00447 1205 MobiDBLite consensus disorder prediction 327 362 - -
Viun3g00447 1205 PANTHER RING FINGER PROTEIN 41, 151 46 1195 - -
Viun3g00447 1205 MobiDBLite consensus disorder prediction 363 378 - -
Viun3g00447 1205 Coils Coil 1188 1205 - -
Viun3g00447 1205 Coils Coil 456 476 - -
Viun3g00447 1205 SUPERFAMILY FYVE/PHD zinc finger 78 117 IPR011011 -
Viun3g00447 1205 SMART PHD_3 63 115 IPR001965 -
Viun3g00447 1205 MobiDBLite consensus disorder prediction 327 435 - -
Viun3g00447 1205 MobiDBLite consensus disorder prediction 414 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00447 Viun-Chr3 2689593 2702762 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun3g00447 PHD 1.7e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00447 - - gmx:100808102 1872.44