Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00446 ATGGAGGCGGATTTTGTGACGAATGATATGCTCGCACTCACACACGATGCTTTTGATGCCAACGATAATGATGATGTAGCTATTGAAGGGGAAAGATGTGGAATATGTATGGATATGGTTATTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACCATCACTAATCTTTGCCCACTTTGCCAGAATGAATTTCAGTTAATCACTTGTGTTCCAGTATATGATACCATTGGAAACAACAAAGTTGAAGATGATTCACTCCTCAGAGATGATGATGACTGGTCCATCGAAGGGAAGAATAACACACTGCAATTTCCCTCATACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGCGATGACTGCAAGGTTCGTAATGGGTTGGCTACTGTTGAAGGAGATTCTGATCTTGATACATCAATAGCATGTGATTCTTGTGACATATGGTATCATGCATTCTGTGTGGGATTTGATACCGAAAGTACATCAGACAGTACATGGTTATGCCCCAGATGTGTAGCAGATTATGTTTCTAAGGGAGCATCTAATTCAATGGAGAGGACAACCGTGGAATGTAATGCAGACAATAGTAACAGTGAATGTCATGCTAAGGATTCCTTTTCAGGAAAAGTGTCTGTCTCTGTTGCTGATACAGGAGAAACAGCTGTTGTTGTCTCGATGGTTGACAGAACAAAATGGGTTCCAGCAACAAGTGAGAAAAGCCTATTGCCTTTAGAAGTTGATGCGGATCCAATGAGTGAATCATGTATTTTAATGTCTGACATAAATGATCAGCAAAGTGGCGAAATGAAGACAATTTCATTACCGATCATGGAAGAAGAACTGGAACTGTCTTTATCAAACAATAGTGATTTAAAGAAAATTGCCAGTGGAACAATGAATGAACCCGGTGGCTTGGATGGAACCAAGTTATTTGATGAGTCCCATACCAAAACTAGTCCATCCAGAATTGAATCTGATATGGGTCTTGATCTTGGTTTGTCAGTGGGCACTTTTTTACCTGTTGATAATGCAGAAAAGAGTGAACCAAAAGATCAAGAACCTGGTGTCCCAGGCTTGACTTCTGAAGAATGTTTTTCGAGAGGAGATGAAATTGAAGTCAATGCTTGTAAGGACAATGCCAGAGTGGTTGGTGGAAAGAGAAAGCATGCTGATTACAGTAATGGGCAAGTTCATATAAAGGCTGAGGATGGAGATGCCAAGCCTGAACTTCCTGAGGAAGTTGTGCCAAAGAAAAGTAAAGCTACTGACAGCCAAATGAGTAACACTGATGACACAGCCAATGATCATCTTTCAGAAAACGGTCCGAAGCACCCTGCTTTAAACGATTCTCCGACAAAGGCAACTGTTACACCAGATATAATGAATATAGTTAAAGGGACAGTCCGAAGGCTTTCCAAGGGACATACTAGTACTAATGCTTGTGACCAGTCATCTGAAAACAAAGGAAATATGGCTGGGTTGAGGGTTAAAAAGATCATGAAGAGAAATTCTGAGGATAGAGAATCATCCTTGTTAGTTCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATCCTCTATAAACTTCGAGGATAACCATTTTGATCCCAAGCTTCTTGAAGCATTTAGGACTGCTATAACAGGGCCTAAAACTGAACTTGTAAACAAGTTATCCCCTGCAGCTATAAAGGCAAAGAAGTCAATGTTGCAGAAAGGCAAAGTGCGTGAAAATTTAACAAAGAAAATTTTTGGGAATTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTCTGGAAATATCGTTGCATGAGAGCTACGAAGCCTGAAAAGATTGAAACATTAAAATCAGTTCTTGATTTACTAAGAAAAGGTTCGGATGGTACAGAATCAAAGCAAGCTTCTGAATGTCAAACCAAGGATCCTATACTTTCTAGGTTGTATTTAGCGGATACATCTGTTTTCCCCCGCAAAGAGGATGTAAAACCTCTCTCTGTCCTTAAAACTGTGGCTAACTCTGAGCAAACCAAACAAAACAATCCATCAGAGAAAGTACCAAATCCATCCGGTAACAATACTATTAAAGCAACAGATGTAAACAATCTCTTATCAAAGATGAGTTTTGTGTCATCTGAAAAAAACGTAGACAAGAAGATTGTACATGGCCCAGTTGGCGATAATTCAACTTCTGGTAAAATACGTTTAAACAATTACTCAGAAAGGACGCCAGTCTCGTCAGTTGGTTCGAAAACTGGCACCAAGGAGTTAGGCCAAAAATCTGGTTGCATGAAGAATGATAAAAAGAAATGGGCCTTGGAGGTCCTTGCGAGGAAAACAGCTACAACCAGCGGGGGAAACACAGCAAATGGAAATCAGGAAGACAATGCAGTTTTTAAAGGAAATTATCCTTTACTTGCCCAACTGCCAAGTGATATGAGACCGGTATTGGCACCTTCTCGACATAATAAAATTCCTATATCAGTTAGGCAGACGCAGCTTTACCGCCTAACCGAGCGCTTATTGAGGAACACAAATCTGTCCGTGATCCGCAGGACTGGCATTACAGAATTAGCTGTTGCAGATGCAATTAATATTGAAAAAGAGGTTGCTGACAGATCAAATAGCAAGCTTGTGTATTTGAACCTTTGTTCACAGGAGCTCTTGCATCGCACAAATAACACAAAATCTGATGTAGCCACAGATACAACTCCAACAGCCTCATCAGCAATGCTTACTGATCAACAATCGGAAATAAATACGGAAGATCTTTCAACTGACCCTGCAGTTGAAACGGCCTTGAAAAATGCTGGTCTGCTGTCTGACTCCCCACCTAGCAGTCCACATGAGAACATAGAAACATGTAATGGTGACATGTCGGGGCCCGATAATATACTTGAACTGGATTCGAATCCTGATCTGGATATTTATGGTGATTTTGAGTATGATTTAGGAGACGAAGATTATATTGGTGCTAGTGTTACACAGGTTTCAAAACCAAAACAAGAGCAAAATGAGTCAAAAGTGAAACTTGTTTTCTCCACCACGAACTTGAAAAAGTCAGATATCGCTTTGGATTGTGCTGACTGTGAGGGACCTGAAAGAAATGAAGTGCCAGGAGAGGCCTCCTGCTCGCCGAATTGTCACAATGATGCAGATCATAGGGATAGGGCTTCTGTTTCTTCAGAGCTCCTACCCTCTGAGAGTGCTATTGAGCCACTTGACAAAGAATTTGAAGAATTATTATACGGCCCAGACAAAGAACCCCTCATAAAAAAATTTCCAGCTGGTGAATCAATATCATTACATGGAGATGGCAAGACAGAAACTCTAAGCGTGGCCAATGACTACCATATTGATAAACAGCATGCTTTGGATAATAAAGTAAAAGCTTCAGAACAGGGGAATGAGAATCTCACAGAAAAAGTTTATGATACTACCATCACCGACCAGTCTTCCAATATATCTGAAGCCGGTGAAAGTTTCCAACGGAAGGAAGAGAAATCTGATGTCACTGCTAAGCAGATTGACTCTGTAAATCATATAACTAAAAAGGTAGAAGCTTACATCAAGGAGCACATCAGACCACTGTGCAAGAGTGGAGTAATCACGGCTGACCAATACAGGTGGGCTGTTGCAAAAACAACTGAGAAGGTAATGAAGTATCATTGCAAAGCAAAGAATGCGAATTTTCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCAGAGCAGTATGCCGAAGCAGCCCAACAGAACAAAAAAAATTGA 3825 0.406 MEADFVTNDMLALTHDAFDANDNDDVAIEGERCGICMDMVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGNNKVEDDSLLRDDDDWSIEGKNNTLQFPSYYIDENAVICLDGDDCKVRNGLATVEGDSDLDTSIACDSCDIWYHAFCVGFDTESTSDSTWLCPRCVADYVSKGASNSMERTTVECNADNSNSECHAKDSFSGKVSVSVADTGETAVVVSMVDRTKWVPATSEKSLLPLEVDADPMSESCILMSDINDQQSGEMKTISLPIMEEELELSLSNNSDLKKIASGTMNEPGGLDGTKLFDESHTKTSPSRIESDMGLDLGLSVGTFLPVDNAEKSEPKDQEPGVPGLTSEECFSRGDEIEVNACKDNARVVGGKRKHADYSNGQVHIKAEDGDAKPELPEEVVPKKSKATDSQMSNTDDTANDHLSENGPKHPALNDSPTKATVTPDIMNIVKGTVRRLSKGHTSTNACDQSSENKGNMAGLRVKKIMKRNSEDRESSLLVQNLRKEIREAVRNKSSINFEDNHFDPKLLEAFRTAITGPKTELVNKLSPAAIKAKKSMLQKGKVRENLTKKIFGNSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKGSDGTESKQASECQTKDPILSRLYLADTSVFPRKEDVKPLSVLKTVANSEQTKQNNPSEKVPNPSGNNTIKATDVNNLLSKMSFVSSEKNVDKKIVHGPVGDNSTSGKIRLNNYSERTPVSSVGSKTGTKELGQKSGCMKNDKKKWALEVLARKTATTSGGNTANGNQEDNAVFKGNYPLLAQLPSDMRPVLAPSRHNKIPISVRQTQLYRLTERLLRNTNLSVIRRTGITELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRTNNTKSDVATDTTPTASSAMLTDQQSEINTEDLSTDPAVETALKNAGLLSDSPPSSPHENIETCNGDMSGPDNILELDSNPDLDIYGDFEYDLGDEDYIGASVTQVSKPKQEQNESKVKLVFSTTNLKKSDIALDCADCEGPERNEVPGEASCSPNCHNDADHRDRASVSSELLPSESAIEPLDKEFEELLYGPDKEPLIKKFPAGESISLHGDGKTETLSVANDYHIDKQHALDNKVKASEQGNENLTEKVYDTTITDQSSNISEAGESFQRKEEKSDVTAKQIDSVNHITKKVEAYIKEHIRPLCKSGVITADQYRWAVAKTTEKVMKYHCKAKNANFLIKEGEKVKKLAEQYAEAAQQNKKN 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00446 1274 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Viun3g00446 1274 MobiDBLite consensus disorder prediction 355 374 - -
Viun3g00446 1274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 96 IPR013083 -
Viun3g00446 1274 SUPERFAMILY RING/U-box 25 78 - -
Viun3g00446 1274 MobiDBLite consensus disorder prediction 396 504 - -
Viun3g00446 1274 MobiDBLite consensus disorder prediction 483 502 - -
Viun3g00446 1274 Coils Coil 525 545 - -
Viun3g00446 1274 Coils Coil 1257 1274 - -
Viun3g00446 1274 ProSiteProfiles Zinc finger PHD-type profile. 65 186 IPR019787 -
Viun3g00446 1274 MobiDBLite consensus disorder prediction 760 780 - -
Viun3g00446 1274 PANTHER RING FINGER PROTEIN 41, 151 115 1264 - -
Viun3g00446 1274 Pfam Ring finger domain 32 72 IPR001841 -
Viun3g00446 1274 MobiDBLite consensus disorder prediction 760 777 - -
Viun3g00446 1274 SMART ring_2 33 71 IPR001841 -
Viun3g00446 1274 SMART ring_2 124 183 IPR001841 -
Viun3g00446 1274 MobiDBLite consensus disorder prediction 432 447 - -
Viun3g00446 1274 Pfam PHD-finger 147 184 IPR019787 -
Viun3g00446 1274 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Viun3g00446 1274 MobiDBLite consensus disorder prediction 396 431 - -
Viun3g00446 1274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 188 IPR013083 -
Viun3g00446 1274 SMART PHD_3 132 184 IPR001965 -
Viun3g00446 1274 MobiDBLite consensus disorder prediction 689 713 - -
Viun3g00446 1274 SUPERFAMILY FYVE/PHD zinc finger 147 186 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00446 Viun-Chr3 2689593 2703493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00446 33 120 C3H Transcription Factor Family AT3G58030 32.632 1.69e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun3g00446 PHD 1.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00446 - - gmx:100808102 2035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00446 3 2689593 2703493 Viun3g00446 3 2689593 2703493 ECH