Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00435 ATGGATGTGCCACAAACTCCAACCCCCTCTCCACATTTGTATCCACAAGAACTTCAACTTAAACTTTACCAAGCCTTCATCTTCTCCATTCCCATACTCTTTTCCATCATTCTTGTTCTCTTGTTTTACTTGTTCTACCTCAAAAGGAGAGCTTCCTCTCTCTCATCACCACCCCTTCACATACTTACCAACAGTTCCAATCCTCAAACAACATATCCTTACCCTTCACAACCTTGCCGATTAGATCTGACTGTGCAATTTCTTGACAAACTTCCAAGAGTTTTATTTGATGAGGATTTTGGAACAAGAGATTCTGTATGTTGTGTTTGCCTTGGAGAATTTGAGGTGAAGGAAGAGCTGCTACAAATTCCTTATTGCAAGCATGTGTTTCACATAAGCTGCATATGCAACTGGTTGCAATCAAACTCCACGTGTCCACTTTGTAGATGCTGCATCACACCCTCCACTAAGTTCCTTAATACACCCTCACCTATTGTATCAGACTCACCACAGCAGGGTGCAATTTCAGGCTCTTCATCACACATCATATCAATGCCTCAGCAACAAGAAGATGAAGTTGGTAATTCCACAAACACTACCATTTCCCAAGGAAATAATGGTGTATTACTTAGATGA 636 0.4104 MDVPQTPTPSPHLYPQELQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPPLHILTNSSNPQTTYPYPSQPCRLDLTVQFLDKLPRVLFDEDFGTRDSVCCVCLGEFEVKEELLQIPYCKHVFHISCICNWLQSNSTCPLCRCCITPSTKFLNTPSPIVSDSPQQGAISGSSSHIISMPQQQEDEVGNSTNTTISQGNNGVLLR 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00435 211 PANTHER RING-H2 FINGER PROTEIN ATL16 8 193 IPR044600 GO:0016567|GO:0016740
Viun3g00435 211 MobiDBLite consensus disorder prediction 186 211 - -
Viun3g00435 211 SUPERFAMILY RING/U-box 85 159 - -
Viun3g00435 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 155 IPR013083 -
Viun3g00435 211 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Viun3g00435 211 Pfam Ring finger domain 107 149 IPR001841 -
Viun3g00435 211 SMART ring_2 107 148 IPR001841 -
Viun3g00435 211 CDD RING-H2_EL5-like 107 149 - -
Viun3g00435 211 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 76 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00435 Viun-Chr3 2627123 2629463 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00435 3 154 C3H Transcription Factor Family AT4G10150 38.608 8.51e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00435 K19039 - pvu:PHAVU_002G300500g 325.094