Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00420 ATGCGTGAAAAATTTTCATTCCACGCTCGCAAACTACACATCCTCACATGGCTAATTCATCTCTCACTAACACTTCTCACTGTAACAGCAACATCATCATCATCGTCATCATCATCACACTGTGGCATGGCCGTTACGCCCTCCACCTCTCTCCTCTCCTTCCTCCAACGCCTCCAAAAAACCGCCTTCGAAGCGTTCGGCGCTACCGATTTCGATCCCAAGACCTACGTCGACGTGCCTCTTAAGTTCGCACTATCCGTCACCGAGGACGCGTTCCAGAAGCTTCCGCGTAATGCCAACGGCACCGTGGCGGCTGAGGATTTAAAGCGCTTTCTAGAAGCCTACTTCGGAGGTGCAGGGGACGATCTGGTGCACCTGAACCCACACGATTTCGTTCGCGAACCGGAGGGTTTCTTGCCCAAGGTCAAACACCCTAAGGTGCGGGCCTGGGCCTTGCAGGTCCATTCGCTTTGGAAAAACTTGACCCGGAAAGTATCCGATGCGGTGCAGGCGCACCCGGACTTGCATACGCTGCTCCCTCTCCCCGGTTCCGTTGTCATTCCCGGTTCGCGTTTTCGCGAGGTTTATTACTGGGATTCTTACTGGGTTATTAGGGGCCTGATCGCGAGTAAAATGCACGACACTGCTACTGCTATCGTGACCAACCTCATTTCCTTGATAGAACAATATGGATTTGTTCTTAATGGTGCTAGATCATATTACACTAACAGGAGCCAGCCTCCCCTTTTAAGCGCTATGATTTATGAGATATACCGTACCACCGGTGACGAGGAATTGGTTAAAAGATCTCTACCTGCACTACTCAAAGAGTATGAATTTTGGAATTCAGATATACATAAGGTGACCATTTTGGATGCTCAAGGTTGCACTCACACCTTAAACCGCTATAATGCAATGTGGGACAAACCCAGGCCAGAATCATTCATTAAGGACCAGGTATTTGCTTCCAACTTCTCGAGTGTTTCAGAAAAACAGCAGTTTTACCGTGACCTGGCTTCAGCTGCTGAATCGGGATGGGATTTCAGCACTAGATGGATGAGAAACCCGCCTAATTTCACAACATTGGCTACAACTTCCGTAATACCTGTTGATTTAAATGCATTTGTACTCGGGATGGAACTTAATATTGCCTTCTTTGCAAAAGTTGTTGGAGATAATAGCACTGCTGAACGGTTCCTGGAAAATGCTGATCTTAGAAAGAAGGCAATGGACTCTGTTTTCTGGAATGCAAACATGAATCAATGGCTTGACTACTGGCTCGAAAATAAATGCGAGGAGGTTCATGTTTGGAAAAACGGGCACCAGAATAAAAATGTATTTGCTTCCAATTTTGTTCCTTTGTGGATGAAACCATTTTATTCAGACACTTCACTTGTGGCTAGTGTCGTTGAAAGTCTCAAAACTTCGGACCTTGTCCGTGCCGCTGGAGTTGCAACTTCTTTAACTGATTCAGGACAACAGTGGGACTTTCCAAATGGCTGGGCGCCACTTCAACACATGCTAGTGGAAGGCCTTCTAAAATCTGGGTCACAAGAAGCAAGGTCATTGGCTGAAGAAATTGCCATCAAATGGGTCACAACCAATTATATCGTTTACAAGAAAACGGGTTTAATGCATGAAAAGCTTGACGTGGAACATTGTGGAGAATTCGGAGGTGGAGGCGAATATGTGCCCCAGACTGGTTTTGGCTGGTCAAATGGTGTTGTGTTGGCATTCTTAGAGGAGTTTGGATGGCCTGAAGATCGGGACATAGAATGTTGA 1782 0.4663 MREKFSFHARKLHILTWLIHLSLTLLTVTATSSSSSSSSHCGMAVTPSTSLLSFLQRLQKTAFEAFGATDFDPKTYVDVPLKFALSVTEDAFQKLPRNANGTVAAEDLKRFLEAYFGGAGDDLVHLNPHDFVREPEGFLPKVKHPKVRAWALQVHSLWKNLTRKVSDAVQAHPDLHTLLPLPGSVVIPGSRFREVYYWDSYWVIRGLIASKMHDTATAIVTNLISLIEQYGFVLNGARSYYTNRSQPPLLSAMIYEIYRTTGDEELVKRSLPALLKEYEFWNSDIHKVTILDAQGCTHTLNRYNAMWDKPRPESFIKDQVFASNFSSVSEKQQFYRDLASAAESGWDFSTRWMRNPPNFTTLATTSVIPVDLNAFVLGMELNIAFFAKVVGDNSTAERFLENADLRKKAMDSVFWNANMNQWLDYWLENKCEEVHVWKNGHQNKNVFASNFVPLWMKPFYSDTSLVASVVESLKTSDLVRAAGVATSLTDSGQQWDFPNGWAPLQHMLVEGLLKSGSQEARSLAEEIAIKWVTTNYIVYKKTGLMHEKLDVEHCGEFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDRDIEC 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00420 593 ProSitePatterns Trehalase signature 2. 494 503 IPR018232 GO:0004555|GO:0005991
Viun3g00420 593 PANTHER TREHALASE 33 590 IPR001661 GO:0004555|GO:0005991
Viun3g00420 593 Pfam Trehalase 71 584 IPR001661 GO:0004555|GO:0005991
Viun3g00420 593 Gene3D - 60 591 IPR012341 GO:0005975
Viun3g00420 593 PRINTS Glycosyl hydrolase family 37 signature 367 384 IPR001661 GO:0004555|GO:0005991
Viun3g00420 593 PRINTS Glycosyl hydrolase family 37 signature 567 580 IPR001661 GO:0004555|GO:0005991
Viun3g00420 593 PRINTS Glycosyl hydrolase family 37 signature 300 317 IPR001661 GO:0004555|GO:0005991
Viun3g00420 593 PRINTS Glycosyl hydrolase family 37 signature 230 248 IPR001661 GO:0004555|GO:0005991
Viun3g00420 593 PRINTS Glycosyl hydrolase family 37 signature 335 352 IPR001661 GO:0004555|GO:0005991
Viun3g00420 593 PRINTS Glycosyl hydrolase family 37 signature 410 426 IPR001661 GO:0004555|GO:0005991
Viun3g00420 593 PRINTS Glycosyl hydrolase family 37 signature 487 503 IPR001661 GO:0004555|GO:0005991
Viun3g00420 593 SUPERFAMILY Six-hairpin glycosidases 71 587 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00420 Viun-Chr3 2533467 2538264 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00420 45 593 Trehalose Biosynthesis Gene Families AT4G24040 58.951 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00420 K01194 - gmx:547539 1010.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00420 3 2533467 2538264 Viun3g00420 3 2533467 2538264 ECH