Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00419 ATGGCCGTTACGCCCTCCACCTCTCTCCTCTCCTTCCTCCAACGCCTCCAAAAAACCGCCTTCGAAGCGTTCGGCGCTACCGATTTCGATCCCAAGACCTACGTCGACGTGCCTCTTAAGTTCGCACTATCCGTCACCGAGGACGCGTTCCAGAAGCTTCCGCGTAATGCCAACGGCACCGTGGCGGCTGAGGATTTAAAGCGCTTTCTAGAAGCCTACTTCGGAGGTGCAGGGGACGATCTGGTGCACCTGAACCCACACGATTTCGTTCGCGAACCGGAGGGTTTCTTGCCCAAGGTCAAACACCCTAAGGTGCGGGCCTGGGCCTTGCAGGTCCATTCGCTTTGGAAAAACTTGACCCGGAAAGTATCCGATGCGGTGCAGGCGCACCCGGACTTGCATACGCTGCTCCCTCTCCCCGGTTCCGTTGTCATTCCCGGTTCGCGTTTTCGCGAGGTTTATTACTGGGATTCTTACTGGGTTATTAGGGGCCTGATCGCGAGTAAAATGCACGACACTGCTACTGCTATCGTGACCAACCTCATTTCCTTGATAGAACAATATGGATTTGTTCTTAATGGTGCTAGATCATATTACACTAACAGGAGCCAGCCTCCCCTTTTAAGCGCTATGATTTATGAGATATACCGTACCACCGGTGACGAGGAATTGGTTAAAAGATCTCTACCTGCACTACTCAAAGAGTATGAATTTTGGAATTCAGATATACATAAGGTGACCATTTTGGATGCTCAAGGTTGCACTCACACCTTAAACCGCTATAATGCAATGTGGGACAAACCCAGGCCAGAATCATTCATTAAGGACCAGGTATTTGCTTCCAACTTCTCGAGTGTTTCAGAAAAACAGCAGTTTTACCGTGACCTGGCTTCAGCTGCTGAATCGGGATGGGATTTCAGCACTAGATGGATGAGAAACCCGCCTAATTTCACAACATTGGCTACAACTTCCGTAATACCTGTTGATTTAAATGCATTTGTACTCGGGATGGAACTTAATATTGCCTTCTTTGCAAAAGTTGTTGGAGATAATAGCACTGCTGAACGGTTCCTGGAAAATGCTGATCTTAGAAAGAAGGCAATGGACTCTGTTTTCTGGAATGCAAACATGAATCAATGGCTTGACTACTGGCTCGAAAATAAATGCGAGGAGGTTCATGTTTGGAAAAACGGGCACCAGAATAAAAATGTATTTGCTTCCAATTTTGTTCCTTTGTGGATGAAACCATTTTATTCAGACACTTCACTTGTGGCTAGTGTCGTTGAAAGTCTCAAAACTTCGGACCTTGTCCGTGCCGCTGGAGTTGCAACTTCTTTAACTGATTCAGGACAACAGTGGGACTTTCCAAATGGCTGGGCGCCACTTCAACACATGCTAGTGGAAGGCCTTCTAAAATCTGGGTCACAAGAAGCAAGGTCATTGGCTGAAGAAATTGCCATCAAATGGGTCACAACCAATTATATCGTTTACAAGAAAACGGGTTTAATGCATGAAAAGCTTGACGTGGAACATTGTGGAGAATTCGGAGGTGGAGGCGAATATGTGCCCCAGACTGGTTTTGGCTGGTCAAATGGTGTTGTGTTGGCATTCTTAGAGGAGTTTGGATGGCCTGAAGATCGGGACATAGAATGTTGA 1656 0.4698 MAVTPSTSLLSFLQRLQKTAFEAFGATDFDPKTYVDVPLKFALSVTEDAFQKLPRNANGTVAAEDLKRFLEAYFGGAGDDLVHLNPHDFVREPEGFLPKVKHPKVRAWALQVHSLWKNLTRKVSDAVQAHPDLHTLLPLPGSVVIPGSRFREVYYWDSYWVIRGLIASKMHDTATAIVTNLISLIEQYGFVLNGARSYYTNRSQPPLLSAMIYEIYRTTGDEELVKRSLPALLKEYEFWNSDIHKVTILDAQGCTHTLNRYNAMWDKPRPESFIKDQVFASNFSSVSEKQQFYRDLASAAESGWDFSTRWMRNPPNFTTLATTSVIPVDLNAFVLGMELNIAFFAKVVGDNSTAERFLENADLRKKAMDSVFWNANMNQWLDYWLENKCEEVHVWKNGHQNKNVFASNFVPLWMKPFYSDTSLVASVVESLKTSDLVRAAGVATSLTDSGQQWDFPNGWAPLQHMLVEGLLKSGSQEARSLAEEIAIKWVTTNYIVYKKTGLMHEKLDVEHCGEFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDRDIEC 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00419 551 ProSitePatterns Trehalase signature 2. 452 461 IPR018232 GO:0004555|GO:0005991
Viun3g00419 551 SUPERFAMILY Six-hairpin glycosidases 29 545 IPR008928 GO:0005975
Viun3g00419 551 PANTHER TREHALASE 12 548 IPR001661 GO:0004555|GO:0005991
Viun3g00419 551 Gene3D - 19 549 IPR012341 GO:0005975
Viun3g00419 551 PRINTS Glycosyl hydrolase family 37 signature 368 384 IPR001661 GO:0004555|GO:0005991
Viun3g00419 551 PRINTS Glycosyl hydrolase family 37 signature 445 461 IPR001661 GO:0004555|GO:0005991
Viun3g00419 551 PRINTS Glycosyl hydrolase family 37 signature 525 538 IPR001661 GO:0004555|GO:0005991
Viun3g00419 551 PRINTS Glycosyl hydrolase family 37 signature 293 310 IPR001661 GO:0004555|GO:0005991
Viun3g00419 551 PRINTS Glycosyl hydrolase family 37 signature 258 275 IPR001661 GO:0004555|GO:0005991
Viun3g00419 551 PRINTS Glycosyl hydrolase family 37 signature 188 206 IPR001661 GO:0004555|GO:0005991
Viun3g00419 551 PRINTS Glycosyl hydrolase family 37 signature 325 342 IPR001661 GO:0004555|GO:0005991
Viun3g00419 551 Pfam Trehalase 29 542 IPR001661 GO:0004555|GO:0005991
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00419 Viun-Chr3 2533467 2538470 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00419 3 551 Trehalose Biosynthesis Gene Families AT4G24040 58.951 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00419 K01194 - gmx:547539 1003.43