Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00406 ATGGGGATTTGCTTTAGCATTGAAGACAAGAGCAACCTCCCCGTTTCCCATTCCAACTCCAAACCTAAGCCTCAAGGATCGGTAGGTCATGAATCTGCCGCTCCAATTGTTTCCATAAACATCAAAGATCTCCGCGAAGGTGTTGGATACAGCAATGTGGATAGTTTCACGTACGAGGAACTGAGGCTCGCTACGAAGCATTTTCGTCCCGATTTCATTTTGGGAGAAGGAGGCTTCGGAGTTGTATATAAAGGCGTCATAGACCATGCTGTGAGGTCGGGTTACAAGACCACCGAGGTTGCAATTAAGGAACTTAATCGTGAAGGATTTCAAGGAGACAGGGAATGGCTGACTGAAGTTAACTATTTAGGTCAATTCAGTCACCCTAATCTGGTGAAGCTCATTGGATATTGCTGTGAGGACGAACACCGGTTATTGGTCTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTCCGCAGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCGAGGGGGCTGGCTTTTCTTCATGGTGCAGAAAGACCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGACGAGGATTTCAATGCGAAGCTTTCTGACTTTGGTCTTGCAAAGGATGGCCCGATGGGGGACCAAACCCATGTTTCAACCCGAGTAATGGGCACATATGGATATGCTGCTCCCGAGTATGTCATGACTGGGCATTTGACAGCTCGAAGCGATGTATATGGTTTTGGGGTGGTACTACTTGAAATGCTTATTGGTAGAAGGGCATTAGACAAGAGCAGGCCGAGCCGAGAACACAACTTGGTCGAGTGGGCCCGCCCGCTTCTGAATCATAATAAGAAACTTCTGAAAATTTTAGACCCAAAATTAGAGGGACAATATTCAAGTAAAACTGCATTAAGGGTAGCCCATTTAGCATACCAATGTCTTAGCCAAAACCCGAAAGGAAGACCTCTAATGAGCCATGTTGTTGAACTTCTCGATAACTTTCAGTCAAGGGAGGAAAATGAGGAAGATCAAATGCTTCAAACTGGTGGTAGCAGTAGTATAACCCTTTATGAGGTTCCCAAGGGCACCAATGGCACTCCAACTTAA 1149 0.4491 MGICFSIEDKSNLPVSHSNSKPKPQGSVGHESAAPIVSINIKDLREGVGYSNVDSFTYEELRLATKHFRPDFILGEGGFGVVYKGVIDHAVRSGYKTTEVAIKELNREGFQGDREWLTEVNYLGQFSHPNLVKLIGYCCEDEHRLLVYEYMASGSLEKHLFRRVGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDEDFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKLEGQYSSKTALRVAHLAYQCLSQNPKGRPLMSHVVELLDNFQSREENEEDQMLQTGGSSSITLYEVPKGTNGTPT 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00406 382 FunFam Probable serine/threonine-protein kinase PBL8 151 363 - -
Viun3g00406 382 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672|GO:0006468
Viun3g00406 382 Gene3D Phosphorylase Kinase; domain 1 44 150 - -
Viun3g00406 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Viun3g00406 382 CDD STKc_IRAK 74 348 - -
Viun3g00406 382 MobiDBLite consensus disorder prediction 359 382 - -
Viun3g00406 382 Gene3D Transferase(Phosphotransferase) domain 1 151 368 - -
Viun3g00406 382 PANTHER OS01G0588500 PROTEIN-RELATED 32 349 - -
Viun3g00406 382 SUPERFAMILY Protein kinase-like (PK-like) 50 345 IPR011009 -
Viun3g00406 382 FunFam Serine/threonine-protein kinase BIK1 37 150 - -
Viun3g00406 382 MobiDBLite consensus disorder prediction 353 382 - -
Viun3g00406 382 ProSiteProfiles Protein kinase domain profile. 68 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00406 382 ProSitePatterns Protein kinases ATP-binding region signature. 74 103 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00406 Viun-Chr3 2429437 2434882 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00406 4 345 Glycoside Hydrolase AT3G07070 46.610 2.04e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun3g00406 PK_Tyr_Ser-Thr 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00406 - - gmx:100800465 709.909