Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00405 ATGGGGATTTGCTTTAGCATTGAAGACAAGAGCAACCTCCCCGTTTCCCATTCCAACTCCAAACCTAAGCCTCAAGCGTCTGAAATAGGATCGGTAGGTCATGAATCTGCCGCTCCAATTGTTTCCATAAACATCAAAGATCTCCGCGAAGGTGTTGGATACAGCAATGTGGATAGTTTCACGTACGAGGAACTGAGGCTCGCTACGAAGCATTTTCGTCCCGATTTCATTTTGGGAGAAGGAGGCTTCGGAGTTGTATATAAAGGCGTCATAGACCATGCTGTGAGGTCGGGTTACAAGACCACCGAGGTTGCAATTAAGGAACTTAATCGTGAAGGATTTCAAGGAGACAGGGAATGGCTGACTGAAGTTAACTATTTAGGTCAATTCAGTCACCCTAATCTGGTGAAGCTCATTGGATATTGCTGTGAGGACGAACACCGGTTATTGGTCTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTCCGCAGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCGAGGGGGCTGGCTTTTCTTCATGGTGCAGAAAGACCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGACGAGGATTTCAATGCGAAGCTTTCTGACTTTGGTCTTGCAAAGGATGGCCCGATGGGGGACCAAACCCATGTTTCAACCCGAGTAATGGGCACATATGGATATGCTGCTCCCGAGTATGTCATGACTGGGCATTTGACAGCTCGAAGCGATGTATATGGTTTTGGGGTGGTACTACTTGAAATGCTTATTGGTAGAAGGGCATTAGACAAGAGCAGGCCGAGCCGAGAACACAACTTGGTCGAGTGGGCCCGCCCGCTTCTGAATCATAATAAGAAACTTCTGAAAATTTTAGACCCAAAATTAGAGGGACAATATTCAAGTAAAACTGCATTAAGGGTAGCCCATTTAGCATACCAATGTCTTAGCCAAAACCCGAAAGGAAGACCTCTAATGAGCCATGTTGTTGAACTTCTCGATAACTTTCAGTCAAGGGAGGAAAATGAGGAAGATCAAATGCTTCAAACTGGTGGTAGCAGTAGTATAACCCTTTATGAGGTTCCCAAGGGCACCAATGGCACTCCAACTTAA 1161 0.4488 MGICFSIEDKSNLPVSHSNSKPKPQASEIGSVGHESAAPIVSINIKDLREGVGYSNVDSFTYEELRLATKHFRPDFILGEGGFGVVYKGVIDHAVRSGYKTTEVAIKELNREGFQGDREWLTEVNYLGQFSHPNLVKLIGYCCEDEHRLLVYEYMASGSLEKHLFRRVGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDEDFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKLEGQYSSKTALRVAHLAYQCLSQNPKGRPLMSHVVELLDNFQSREENEEDQMLQTGGSSSITLYEVPKGTNGTPT 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00405 386 Gene3D Transferase(Phosphotransferase) domain 1 155 372 - -
Viun3g00405 386 CDD STKc_IRAK 78 352 - -
Viun3g00405 386 MobiDBLite consensus disorder prediction 357 386 - -
Viun3g00405 386 MobiDBLite consensus disorder prediction 13 33 - -
Viun3g00405 386 FunFam Probable serine/threonine-protein kinase PBL8 155 367 - -
Viun3g00405 386 Pfam Protein tyrosine and serine/threonine kinase 78 349 IPR001245 GO:0004672|GO:0006468
Viun3g00405 386 FunFam Serine/threonine-protein kinase BIK1 41 154 - -
Viun3g00405 386 PANTHER OS01G0588500 PROTEIN-RELATED 29 353 - -
Viun3g00405 386 MobiDBLite consensus disorder prediction 363 386 - -
Viun3g00405 386 Gene3D Phosphorylase Kinase; domain 1 48 154 - -
Viun3g00405 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Viun3g00405 386 SUPERFAMILY Protein kinase-like (PK-like) 54 349 IPR011009 -
Viun3g00405 386 ProSiteProfiles Protein kinase domain profile. 72 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00405 386 ProSitePatterns Protein kinases ATP-binding region signature. 78 107 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00405 Viun-Chr3 2429437 2434885 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00405 59 349 Glycoside Hydrolase AT3G07070 52.041 5.93e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun3g00405 PK_Tyr_Ser-Thr 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00405 - - gmx:100800465 708.368