Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00401 ATGGCACTGAGTGGTAGGCATTGCTGGATCATCTTCCTCGTTTTTCAAGCACCCTTCTTTCTTCTCTCTCATGCCGCTTCTGACTTAGAATTGCTCCTCAAAATGAAAGAAAGCTTGGAAAACTACGGTTCCTCCTTGGACTCCTGGAACTCTACCACTCCTCCTTGCACCGATGGCCATGCCAACTGGCGTGGCATTCTTTGCTACCAAGGAAAAGTTTGGGGCGTGAAGCTTGAGAACATAGGGCTCCAAGGCCTCATTGACATAGATGCTCTTAAGGCCTTGCCTTACCTAAGAACCTTGAGTTTCATGAACAATAGTTTGGAGGGTTCATGGCCCGAAATTCACCACTTGGTTGGTCTCAAATCTATTTACCTTTCCAATAACAAGTTTTCTGGGGAGATTCCTTATAGAGCCTTCGAGGGGTTGAAGTGGTTGAAGAAAATTTATCTCTCCAACAACCAGTTCTCCGGTTACGTTCCAACTTCGCTCACCATTTTGCCCAGACTCATAGAGCTGAGGTTGGACGGGAATGAGTTCACTGGTCAGATTCCCCGTTTTCATCCCCTCAACAGATTGAGATTGTTTAATGTTGCTAATAATCAGTTGCAGGGTCAGATTCCTTCTACCGTTAATAGAATGCCGGCTTCTTCCTTTGCTGGTAATGAAAGGTTATGTGGTGCCCCATTGGAGTCATGCACACCGAAGCCCTCCACTGCGAGCATGGTTGTGGCATTGGTGGTTGTTTGCGTGGCGGTGCTTGTGATTGGAATAGTGGTGCTCATCATTCACAGAAAAAAGAACGGACCGTGTCAAGCGAAATTGGGGAGTCCACCCAGCAGCATGGACAAAGGGCGTCTGAGGGACGTGGGTGATGAGAGCCGCAGGTCCACAAGGTCAATGAGTCCCTCAGACAGCAGAAGAGCTGATCACTTGAGACTCTCTTTTCTGAGAGATGACAGAGAAATGTTTGACCTGCAAGAGTTGCTGAGAGCTTCTGCTGAGATTTTGGGAAGTGGCTGCTTCAGCTCTTCATACAAGGCTGCTTTGGTGAATGGGCCAACAATAGTGGTGAAGAGGTTCAAGCAGATGAACAATGTGGGGAAGGAAGAGTTCCAAGAGCACATGAAAAGGCTAGGAAGGTTGAGTCATCCTAACTTGCTTCCTCCTGTGGCTTACTATTACAGAAGGGAAGAGAAGCTCTTGGTCACAGACTATGTTCACAATGGCAGTCTCGCTGTTCGCCTTCATGGACACCAATCCCTGGGAGAACCAAGCCTTGAGTGGCCAATCCGGTTGAAGATTGTGAAAGGCATAGCGAAAGGTCTTGAATATCTATACAGGGACATGCCAAGCCTAATTGCCCCACACGGAAATCTGAAGTCCTCTAATGTTCTATTGAGTGAATCTTTTGAGCCTCTTCTGACAGACTATGGTCTAGTTCCTGTGATAAATCAGGAACTGGCTCAGGACATCATGGTGATATACAAGTCTCCAGAGTATTTGCAACAAGGAAGGATCACAAAGAAGACTGATGTATGGTGTCTTGGAATACTGATTCTGGAGATCCTAACTGGGAAATTCCCTGCAAACTTTCTGCAAAAGGGTAAAGGGAGTGAGGTGAGTTTGGCAAGTTGGGTGGATTCAGTGGTGCCAGAAGAGTGGACCAATGCTGTGTTTGATCAAGAAATGGGGGCAACAAAGAACAGTGAAGGAGAGATGGGGAAGCTTTTGAAGATTGCTTTGAATTGTTGTGAAGCGGATGTGGATAAGAGGTGGGATTTAAAGGAAGCTGTAGTAAAAATTCTTGAGGTGAAGCCAAGGGATGATGATCAAGAAAATTTGTTAATTTCTTATGATAGTGATGCAGAATTGATTTCTTCAACTTGA 1890 0.4598 MALSGRHCWIIFLVFQAPFFLLSHAASDLELLLKMKESLENYGSSLDSWNSTTPPCTDGHANWRGILCYQGKVWGVKLENIGLQGLIDIDALKALPYLRTLSFMNNSLEGSWPEIHHLVGLKSIYLSNNKFSGEIPYRAFEGLKWLKKIYLSNNQFSGYVPTSLTILPRLIELRLDGNEFTGQIPRFHPLNRLRLFNVANNQLQGQIPSTVNRMPASSFAGNERLCGAPLESCTPKPSTASMVVALVVVCVAVLVIGIVVLIIHRKKNGPCQAKLGSPPSSMDKGRLRDVGDESRRSTRSMSPSDSRRADHLRLSFLRDDREMFDLQELLRASAEILGSGCFSSSYKAALVNGPTIVVKRFKQMNNVGKEEFQEHMKRLGRLSHPNLLPPVAYYYRREEKLLVTDYVHNGSLAVRLHGHQSLGEPSLEWPIRLKIVKGIAKGLEYLYRDMPSLIAPHGNLKSSNVLLSESFEPLLTDYGLVPVINQELAQDIMVIYKSPEYLQQGRITKKTDVWCLGILILEILTGKFPANFLQKGKGSEVSLASWVDSVVPEEWTNAVFDQEMGATKNSEGEMGKLLKIALNCCEADVDKRWDLKEAVVKILEVKPRDDDQENLLISYDSDAELISST 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00401 629 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 607 IPR046959 -
Viun3g00401 629 FunFam Pollen receptor-like kinase 1 407 615 - -
Viun3g00401 629 FunFam pollen receptor-like kinase 1 300 406 - -
Viun3g00401 629 MobiDBLite consensus disorder prediction 285 306 - -
Viun3g00401 629 Pfam Leucine rich repeat 121 179 IPR001611 GO:0005515
Viun3g00401 629 Gene3D Transferase(Phosphotransferase) domain 1 407 615 - -
Viun3g00401 629 Gene3D Ribonuclease Inhibitor 189 233 IPR032675 -
Viun3g00401 629 Pfam Leucine rich repeat N-terminal domain 26 68 IPR013210 -
Viun3g00401 629 SUPERFAMILY L domain-like 53 215 - -
Viun3g00401 629 Pfam Protein tyrosine and serine/threonine kinase 335 599 IPR001245 GO:0004672|GO:0006468
Viun3g00401 629 Gene3D Phosphorylase Kinase; domain 1 297 406 - -
Viun3g00401 629 MobiDBLite consensus disorder prediction 270 306 - -
Viun3g00401 629 SUPERFAMILY Protein kinase-like (PK-like) 335 603 IPR011009 -
Viun3g00401 629 ProSiteProfiles Protein kinase domain profile. 331 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00401 629 Gene3D Ribonuclease Inhibitor 25 187 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00401 Viun-Chr3 2408353 2412011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00401 8 628 Receptor kinase-like Gene Family AT5G35390 52.352 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun3g00401 PK_Tyr_Ser-Thr 4.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00401 - - gmx:100804368 969.533