Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00397 ATGGAAGACTATGATACGCGGAGGGATAACGGTGGAAATGGAGTGGTAGTGCCACCTTGCACTTGCTCGGGCGACGACTTTCGTGCGCGTGGCGGTGGAAAAGAATTATCGCGAGTTGTTGCTGCTGCTAGAAACGGTTCTTCCGTTTCAAATTATGACATGGCTGTGTCGCGGAACGTTAAGAAAACACAAAAGCGTAAAGGTCTTCAGGAGCTGTTCACAGCCGATTACATTGTGAACAGAGTGTTGCAGAAGGATGGTCCTCCGTTTGGTCAGGAGTTCGACTTTCTTCCTTCTGGACCCAGACACACTTCTGCTTGTCAAGAGGACCAAGGATCCTCAAAAAGGAGGAAGGGTTCCAAGAGTGCGACAGCACCTGTGAAGAAGCATGGTATTGGCAAAGGTCTGATGACAGTTTGGAGGGCAACAAATCCTGATGCTAGAGACCTTCCAACTGGTTTTGGCGTTGATGGCCAAGAAGTTCCTTTACTTTCAAATTCTATAGGACACAAGCTGATCCATGAAAACAACAGGTCACGGAAAACAGTAAACAGGAATGTAATGACAAAAAATAAAATGCAGAATAAGAGAAATAAATCACAGGATAAGAGGAAAATTTCCATGCAAAGAGTGGGGGAACTGAACCTATGTGTGACTCAGAATCAGTCACCAAACAAAAGCTGTGGACTAGCTCTTGATAATGCAATATCAGAGGAGGGAGTTGATCGAGTTTCAATGTTAATTGATGATGAAGAGCTAGAGCTGAGGGAGTTACAAGAAGGAACTGATCTGTTTAGGTGTCCTAATCATCTTGCTGCCAGTGGAATGCTTGTCTGCTCACTTTGTAAAGATGCGCTAGTGAAGTTTCCACCAGATACTGTCAAGATGAAGAAACCTATCCATTTGCAACCTTGGGACTCCTCTCCTGAACTTGTCAAGAAATTATTTAAGGTTTTCCATTTCATTTATACATATGCTATAATTGTTGATATTTGTCCCTTCACTCTTGACGAGCTTGTTCAAGCTTTTCATGACAAGGACTCAATGTTACTTGGCAAGATTCATGTCGCCCTTCTCACACTTCTTCTATCTGACATTGAAGTGGAGCTTACTAATGGATTTTCACCTCATTTAAATAAATCATGTAACTTTCTTGCATTGCTTCATTCGGTTGAAAGTCAGGAATATTCCCTGGACTTCTGGAGAAGATCTCTAAACTCTCTTACTTGGATTGAAATACTTCGTCAAGTGCTGGTTGCTTCTGGATTTGGTTCGAAACAAGGGTCCTTACGGAGAGATGTCCTTAACAAGGAATTGAATCTTCTTGTAAACTATGGTCTATGCCCTGGCACTTTGAAGAGTGAGTTGTTTAATATCTTGTCAGAGAGAGGAAACACTGGATGCAAAGTGGCTGAGCTGGCAAAGTCAATGCAGATTGTTGAATTAAACCTTGCCAGCACTACAGAGGAACTTGAGTCTTTAATATGTTCTACTCTGTCAAGTGATATTACTTTATTTGAAAAAATTTCATCTAGTGCTTACCGATTGCGAATGAGCACAGTTATGAAGGACAGTGATGAATCTCATTCAGATACGGAGTACTCTGGTAGTGTTGATGATGAACTTAATGACACTGATACATGCAGCAGTGCTGATGATTATGAAAATGATTCAATAAATTCCAGTATAAGAAAATTGAAGAGTGTAAACAGTCATAAAAATAATATGAGGAAAATGTACATGGAAATGGATGAGAGCCGTTCCGGAGAAGCATGGTTATTAGGACTGATGGAGATTGAATATTCAAACTTAAACATTGAAGAAAAATTGAATGCATTGGCAGCTTTAACTGATCTTGTTTCATCTGGATCCAGCGTTAGGATGAAGGATTTGTCTAAAGTCTCAGCTGATTGCAATTCTAGCATCCAATTACGAGGGTCTGGAGCTAAAATAAAGAGATCAGTAATAAAGAAACCTGGGTCCCTTTTGAACCATAAAGGACACTTGAATTCTGATCCCTGTACTGTGGACTCCTCATCATTATTCTCTAGATTCCATAGTTATGAAGCTTACTTCCAAAAGGGAAACGGTTCATCTATGTCACATCCCATTCAATCAGTGTTTTTGGGATCTGATCGTCGGTACAATAGATACTGGCTTTTCTTGGGCCCATGTAATGTAGATGATCCTGGTCACAGAAGGATATATTTTGAATCTTCTGAAGATGGTCACTGGGAGGTTATTGATACTGTGGAGGCGTTGTGTGCCTTGATGTCAGTTCTGGACGATAGAGGAAAACGGGAGGCTCTTCTTATTGAATCATTGGAAAGGAGACAAACATCACTATGCAGATCTATGGCTAGGATTAATGTTAATAGTAGTACTGGAATGGGTTCTATGTCACATTCTGATCAGTCTGAACTGGATATGGTCACAGATGACAGTTATTCTCCTGCATCTGATGTAGACAACCTGAACATGACAGAGACAGCTAAAGACTCTTTTCCTTCAGCTGGGGCTGTGGTAATTGAAGCTGGAAAGAAAGTAGAGGATCTGATTAAAAAATGGATCCGTGTTCAAGAATATGATTCTTGGGTTTGGAATTCTTTTTATTCAGATCTCAATGTCGTAAAATATGGTAGAAGGTCTTATATGGACTCTCTTGCCAGATGTAAGAGTTGTCATGATCTATACTGGCGAGACGAGAGACACTGTAAAATTTGCCATATGACATTTGAGCTTGATTTTGACCTAGAAGAAAAATATGCGATCCACATAGCCACTTGCAGGGAGAAAGAAGACAACAACACATTTCCTAATCACAAAGTGCTGCCATCACAGATTCAATCTCTGAAAGCTGCAGTTTATGCTATTGAGTCTGTTATGCCTGAGGATGCCCTGGTTGGTGCCTGGAGGAAATCTGCTCATAAACTATGGGTGAAACGACTCAGACGCACCACAACTTTAGTGGAGCTTTTACAGGTTCTTGAAGATTTTGTTGGTGCCATCAATAAGGACTGGTTGTTTGAATGCAAATTTCCGAATGGTGTGGTTGAAGAAATCATTGCATCTTTTGCATCTATGCCCCATACATCATCCGCCCTTGGTCTGTGGTTAGTGAAGCTAGATGTCATAATTGCTCCCTACCTGGACAGAGTCCATCCTCTGAAAAAGCAGGGAACCTGTCAACAAGGTCCTTGGCGATAG 3207 0.411 MEDYDTRRDNGGNGVVVPPCTCSGDDFRARGGGKELSRVVAAARNGSSVSNYDMAVSRNVKKTQKRKGLQELFTADYIVNRVLQKDGPPFGQEFDFLPSGPRHTSACQEDQGSSKRRKGSKSATAPVKKHGIGKGLMTVWRATNPDARDLPTGFGVDGQEVPLLSNSIGHKLIHENNRSRKTVNRNVMTKNKMQNKRNKSQDKRKISMQRVGELNLCVTQNQSPNKSCGLALDNAISEEGVDRVSMLIDDEELELRELQEGTDLFRCPNHLAASGMLVCSLCKDALVKFPPDTVKMKKPIHLQPWDSSPELVKKLFKVFHFIYTYAIIVDICPFTLDELVQAFHDKDSMLLGKIHVALLTLLLSDIEVELTNGFSPHLNKSCNFLALLHSVESQEYSLDFWRRSLNSLTWIEILRQVLVASGFGSKQGSLRRDVLNKELNLLVNYGLCPGTLKSELFNILSERGNTGCKVAELAKSMQIVELNLASTTEELESLICSTLSSDITLFEKISSSAYRLRMSTVMKDSDESHSDTEYSGSVDDELNDTDTCSSADDYENDSINSSIRKLKSVNSHKNNMRKMYMEMDESRSGEAWLLGLMEIEYSNLNIEEKLNALAALTDLVSSGSSVRMKDLSKVSADCNSSIQLRGSGAKIKRSVIKKPGSLLNHKGHLNSDPCTVDSSSLFSRFHSYEAYFQKGNGSSMSHPIQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRIYFESSEDGHWEVIDTVEALCALMSVLDDRGKREALLIESLERRQTSLCRSMARINVNSSTGMGSMSHSDQSELDMVTDDSYSPASDVDNLNMTETAKDSFPSAGAVVIEAGKKVEDLIKKWIRVQEYDSWVWNSFYSDLNVVKYGRRSYMDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEEKYAIHIATCREKEDNNTFPNHKVLPSQIQSLKAAVYAIESVMPEDALVGAWRKSAHKLWVKRLRRTTTLVELLQVLEDFVGAINKDWLFECKFPNGVVEEIIASFASMPHTSSALGLWLVKLDVIIAPYLDRVHPLKKQGTCQQGPWR 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00397 1068 PANTHER HOMEOBOX PROTEIN SIX 206 1045 - -
Viun3g00397 1068 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 588 627 IPR028942 -
Viun3g00397 1068 SMART testlast3 309 368 IPR018501 -
Viun3g00397 1068 Pfam DDT domain 310 365 IPR018501 -
Viun3g00397 1068 ProSiteProfiles DDT domain profile. 309 368 IPR018501 -
Viun3g00397 1068 MobiDBLite consensus disorder prediction 98 129 - -
Viun3g00397 1068 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 705 778 IPR028941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00397 Viun-Chr3 2363324 2372667 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00397 172 1046 Homeobox Transcription Factor Family AT1G28420 25.670 1.71e-70 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Viun3g00397 WSD 1.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00397 - - gmx:100792062 1794.63