Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00396 ATGGAAGACTATGATACGCGGAGGGATAACGGTGGAAATGGAGTGGTAGTGCCACCTTGCACTTGCTCGGGCGACGACTTTCGTGCGCGTGGCGGTGGAAAAGAATTATCGCGAGTTGTTGCTGCTGCTAGAAACGGTTCTTCCGTTTCAAATTATGACATGGCTGTGTCGCGGAACGTTAAGAAAACACAAAAGCGTAAAGGTCTTCAGGAGCTGTTCACAGCCGATTACATTGTGAACAGAGTGTTGCAGAAGGATGGTCCTCCGTTTGGTCAGGAGTTCGACTTTCTTCCTTCTGGACCCAGACACACTTCTGCTTGTCAAGAGGACCAAGGATCCTCAAAAAGGAGGAAGGGTTCCAAGAGTGCGACAGCACCTGTGAAGAAGCATGGTATTGGCAAAGGTCTGATGACAGTTTGGAGGGCAACAAATCCTGATGCTAGAGACCTTCCAACTGGTTTTGGCGTTGATGGCCAAGAAGTTCCTTTACTTTCAAATTCTATAGGACACAAGCTGATCCATGAAAACAACAGGTCACGGAAAACAGTAAACAGGAATGGGGAACTGAACCTATGTGTGACTCAGAATCAGTCACCAAACAAAAGCTGTGGACTAGCTCTTGATAATGCAATATCAGAGGAGGGAGTTGATCGAGTTTCAATGTTAATTGATGATGAAGAGCTAGAGCTGAGGGAGTTACAAGAAGGAACTGATCTGTTTAGGTGTCCTAATCATCTTGCTGCCAGTGGAATGCTTGTCTGCTCACTTTGTAAAGATGCGCTAGTGAAGTTTCCACCAGATACTGTCAAGATGAAGAAACCTATCCATTTGCAACCTTGGGACTCCTCTCCTGAACTTGTCAAGAAATTATTTAAGGTTTTCCATTTCATTTATACATATGCTATAATTGTTGATATTTGTCCCTTCACTCTTGACGAGCTTGTTCAAGCTTTTCATGACAAGGACTCAATGTTACTTGGCAAGATTCATGTCGCCCTTCTCACACTTCTTCTATCTGACATTGAAGTGGAGCTTACTAATGGATTTTCACCTCATTTAAATAAATCATGTAACTTTCTTGCATTGCTTCATTCGGTTGAAAGTCAGGAATATTCCCTGGACTTCTGGAGAAGATCTCTAAACTCTCTTACTTGGATTGAAATACTTCGTCAAGTGCTGGTTGCTTCTGGATTTGGTTCGAAACAAGGGTCCTTACGGAGAGATGTCCTTAACAAGGAATTGAATCTTCTTGTAAACTATGGTCTATGCCCTGGCACTTTGAAGAGTGAGTTGTTTAATATCTTGTCAGAGAGAGGAAACACTGGATGCAAAGTGGCTGAGCTGGCAAAGTCAATGCAGATTGTTGAATTAAACCTTGCCAGCACTACAGAGGAACTTGAGTCTTTAATATGTTCTACTCTGTCAAGTGATATTACTTTATTTGAAAAAATTTCATCTAGTGCTTACCGATTGCGAATGAGCACAGTTATGAAGGACAGTGATGAATCTCATTCAGATACGGAGTACTCTGGTAGTGTTGATGATGAACTTAATGACACTGATACATGCAGCAGTGCTGATGATTATGAAAATGATTCAATAAATTCCAGTATAAGAAAATTGAAGAGTGTAAACAGTCATAAAAATAATATGAGGAAAATGTACATGGAAATGGATGAGAGCCGTTCCGGAGAAGCATGGTTATTAGGACTGATGGAGATTGAATATTCAAACTTAAACATTGAAGAAAAATTGAATGCATTGGCAGCTTTAACTGATCTTGTTTCATCTGGATCCAGCGTTAGGATGAAGGATTTGTCTAAAGTCTCAGCTGATTGCAATTCTAGCATCCAATTACGAGGGTCTGGAGCTAAAATAAAGAGATCAGTAATAAAGAAACCTGGGTCCCTTTTGAACCATAAAGGACACTTGAATTCTGATCCCTGTACTGTGGACTCCTCATCATTATTCTCTAGATTCCATAGTTATGAAGCTTACTTCCAAAAGGGAAACGGTTCATCTATGTCACATCCCATTCAATCAGTGTTTTTGGGATCTGATCGTCGGTACAATAGATACTGGCTTTTCTTGGGCCCATGTAATGTAGATGATCCTGGTCACAGAAGGATATATTTTGAATCTTCTGAAGATGGTCACTGGGAGGTTATTGATACTGTGGAGGCGTTGTGTGCCTTGATGTCAGTTCTGGACGATAGAGGAAAACGGGAGGCTCTTCTTATTGAATCATTGGAAAGGAGACAAACATCACTATGCAGATCTATGGCTAGGATTAATGTTAATAGTAGTACTGGAATGGGTTCTATGTCACATTCTGATCAGTCTGAACTGGATATGGTCACAGATGACAGTTATTCTCCTGCATCTGATGTAGACAACCTGAACATGACAGAGACAGCTAAAGACTCTTTTCCTTCAGCTGGGGCTGTGGTAATTGAAGCTGGAAAGAAAGTAGAGGATCTGATTAAAAAATGGATCCGTGTTCAAGAATATGATTCTTGGGTTTGGAATTCTTTTTATTCAGATCTCAATGTCGTAAAATATGGTAGAAGGTCTTATATGGACTCTCTTGCCAGATGTAAGAGTTGTCATGATCTATACTGGCGAGACGAGAGACACTGTAAAATTTGCCATATGACATTTGAGCTTGATTTTGACCTAGAAGAAAAATATGCGATCCACATAGCCACTTGCAGGGAGAAAGAAGACAACAACACATTTCCTAATCACAAAGTGCTGCCATCACAGATTCAATCTCTGAAAGCTGCAGTTTATGCTATTGAGTCTGTTATGCCTGAGGATGCCCTGGTTGGTGCCTGGAGGAAATCTGCTCATAAACTATGGGTGAAACGACTCAGACGCACCACAACTTTAGTGGAGCTTTTACAGGTTCTTGAAGATTTTGTTGGTGCCATCAATAAGGACTGGTTGTTTGAATGCAAATTTCCGAATGGTGTGGTTGAAGAAATCATTGCATCTTTTGCATCTATGCCCCATACATCATCCGCCCTTGGTCTGTGGTTAGTGAAGCTAGATGTCATAATTGCTCCCTACCTGGACAGAGTCCATCCTCTGAAAAAGCAGGGAACCTGTCAACAAGGTCCTTGGCGATAG 3132 0.4138 MEDYDTRRDNGGNGVVVPPCTCSGDDFRARGGGKELSRVVAAARNGSSVSNYDMAVSRNVKKTQKRKGLQELFTADYIVNRVLQKDGPPFGQEFDFLPSGPRHTSACQEDQGSSKRRKGSKSATAPVKKHGIGKGLMTVWRATNPDARDLPTGFGVDGQEVPLLSNSIGHKLIHENNRSRKTVNRNGELNLCVTQNQSPNKSCGLALDNAISEEGVDRVSMLIDDEELELRELQEGTDLFRCPNHLAASGMLVCSLCKDALVKFPPDTVKMKKPIHLQPWDSSPELVKKLFKVFHFIYTYAIIVDICPFTLDELVQAFHDKDSMLLGKIHVALLTLLLSDIEVELTNGFSPHLNKSCNFLALLHSVESQEYSLDFWRRSLNSLTWIEILRQVLVASGFGSKQGSLRRDVLNKELNLLVNYGLCPGTLKSELFNILSERGNTGCKVAELAKSMQIVELNLASTTEELESLICSTLSSDITLFEKISSSAYRLRMSTVMKDSDESHSDTEYSGSVDDELNDTDTCSSADDYENDSINSSIRKLKSVNSHKNNMRKMYMEMDESRSGEAWLLGLMEIEYSNLNIEEKLNALAALTDLVSSGSSVRMKDLSKVSADCNSSIQLRGSGAKIKRSVIKKPGSLLNHKGHLNSDPCTVDSSSLFSRFHSYEAYFQKGNGSSMSHPIQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRIYFESSEDGHWEVIDTVEALCALMSVLDDRGKREALLIESLERRQTSLCRSMARINVNSSTGMGSMSHSDQSELDMVTDDSYSPASDVDNLNMTETAKDSFPSAGAVVIEAGKKVEDLIKKWIRVQEYDSWVWNSFYSDLNVVKYGRRSYMDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEEKYAIHIATCREKEDNNTFPNHKVLPSQIQSLKAAVYAIESVMPEDALVGAWRKSAHKLWVKRLRRTTTLVELLQVLEDFVGAINKDWLFECKFPNGVVEEIIASFASMPHTSSALGLWLVKLDVIIAPYLDRVHPLKKQGTCQQGPWR 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00396 1043 SMART testlast3 284 343 IPR018501 -
Viun3g00396 1043 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 563 602 IPR028942 -
Viun3g00396 1043 MobiDBLite consensus disorder prediction 97 128 - -
Viun3g00396 1043 PANTHER HOMEOBOX PROTEIN SIX 182 1020 - -
Viun3g00396 1043 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 680 753 IPR028941 -
Viun3g00396 1043 Pfam DDT domain 285 340 IPR018501 -
Viun3g00396 1043 ProSiteProfiles DDT domain profile. 284 343 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00396 Viun-Chr3 2363324 2372667 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00396 205 1021 Homeobox Transcription Factor Family AT1G28420 25.937 2.75e-70 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Viun3g00396 WSD 1.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00396 - - gmx:100792062 1748.41