Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00394 ATGGCTTTATCCCTACCTACCCATTCTTCTCGCTCCCTCCTCCCTCTTCCACCGTCCACCAAACCCACTTTCCCCACCCTCCGCCGCCTCAACCACCGCGTTTCTCTCGTCACTGCTTCCACTCCCCTGCTCCAAGTCAATGACCTCAGAGCCAAGATCGTCGAGTCCAACGTTCAGATTCTCCACGGCGTTAACCTCACCGTTAACCAAGGAGAGGTCCACGCCATCATGGGAAAAAATGGCTCTGGCAAAAGCACTTTCGCCAAGGTTCTAGTGGGGCACCCTGATTATGAAGTTACTGGAGGCAGTGTTGTATTCAAAGGGGAGAATTTGCTTGAAATGGAACCCGAAGAACGGTCTCTTTCGGGTCTCTTCATGAGTTTCCAATCCCCTGTTGAAATTCCTGGTGTTTCCAATGATGAGTTTCTTGTCATGGCCTACAATGCTCGAAGGAAAAAGCTTGGTCTACCCGAGCTTGGTCCACTCGAGTGTTTTTCTTACCTGATGGAGAAGCTTCAGCTTGTTAATATGAAGCCTGATTTTCTCAATAGGAATGTGAATGAAGGGTTTAGTGGCGGTGAACGCAAACGCAATGAAATCTTGCAGCTTGCGGTTTTGGGGGCGGATTTGGCTATTTTGGATGAGATTGATTCTGGGTTGGATGTTGATGCGCTTAGGGATGTTGCCGGTGCCGTTAATCGGATTCTCACCCCACAAAATTCTTTGATGATGATAACTCATTATAGACGGATTCTGGATCTTTTGAATCCTACACATGTACATGTTATGGACAAAGGGAAAATTGCCAGAACAGGTGACATATCGATGGTAGAAACTATTGAGGCAGAGGGATATGAAACTGTCTCCGCTTCAACATAA 879 0.4733 MALSLPTHSSRSLLPLPPSTKPTFPTLRRLNHRVSLVTASTPLLQVNDLRAKIVESNVQILHGVNLTVNQGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLEMEPEERSLSGLFMSFQSPVEIPGVSNDEFLVMAYNARRKKLGLPELGPLECFSYLMEKLQLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAGAVNRILTPQNSLMMITHYRRILDLLNPTHVHVMDKGKIARTGDISMVETIEAEGYETVSAST 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00394 292 Pfam ABC transporter 61 215 IPR003439 GO:0005524
Viun3g00394 292 MobiDBLite consensus disorder prediction 1 17 - -
Viun3g00394 292 Gene3D - 43 291 IPR027417 -
Viun3g00394 292 NCBIfam Fe-S cluster assembly ATPase SufC 44 287 IPR010230 GO:0005524
Viun3g00394 292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 275 IPR027417 -
Viun3g00394 292 ProSitePatterns ABC transporters family signature. 190 204 IPR017871 GO:0005524|GO:0016887
Viun3g00394 292 MobiDBLite consensus disorder prediction 1 25 - -
Viun3g00394 292 CDD ABC_FeS_Assembly 44 285 IPR010230 GO:0005524
Viun3g00394 292 SMART AAA_5 70 258 IPR003593 GO:0016887
Viun3g00394 292 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 44 290 IPR003439 GO:0005524
Viun3g00394 292 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 32 290 IPR010230 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00394 Viun-Chr3 2357795 2361759 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00394 57 272 Calmodulin-binding Proteins AT2G36910 24.017 1.17e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00394 K09013 - gmx:100811883 473.011