Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00377 ATGGGGAGAAAGTGCTCGCATTGTGGAGTGATAGGGCACAATTCAAGGACCTGCACATCTTTGAGAGGCTCTTCTTTCGTTGGGCTTCGTCTCTTTGGCGTGCAATTAGACACTTGTGTTACCATCAAGAAAAGCTTCAGCATGGACTCTTTACCCTCTTCATCATCTTCCTCATTTTCTTCTTCAAGATTAACCATTGATGAAAACTCCGACCGAACCTCTTTTGGGTATCTCTCAGATGGTCTCATAGGTCGAGTTCAAGAGAGAAAGAAAGGAGTGCCATGGACAGAAGAAGAACACAGAATATTCCTTGTCGGATTGGAGAAGCTGGGAAAGGGTGATTGGAGAGGAATCTCCAGAAACTTTGTGACAACAAGAACTCCAACACAAGTTGCAAGCCATGCTCAGAAGTACTTTCTCAGATTGGCAACTATAGATAAGAAGAAGCGACGTTCGAGTCTCTTTGACGTGGTTGGTAGCAACAACGTTGGAGGTTGTCATGAAAAAGATGAGTCGAAATGTGAAGTTAAGAATAATGATGCGACTCTGTCGTTGCTAGGGCGCATAAGCTACTTTGAACAAGAAACGAAATCAGATTATAATAAGAAGCAAGAAAAGCTTCATCAAGTTCCTAATCTGGAGCTTACTCTTCGTTCCTGCTTGGGACAATTAGTGTGA 678 0.4292 MGRKCSHCGVIGHNSRTCTSLRGSSFVGLRLFGVQLDTCVTIKKSFSMDSLPSSSSSSFSSSRLTIDENSDRTSFGYLSDGLIGRVQERKKGVPWTEEEHRIFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLRLATIDKKKRRSSLFDVVGSNNVGGCHEKDESKCEVKNNDATLSLLGRISYFEQETKSDYNKKQEKLHQVPNLELTLRSCLGQLV 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00377 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 143 IPR017930 -
Viun3g00377 225 Gene3D - 93 145 - -
Viun3g00377 225 PANTHER TRANSCRIPTION FACTOR KUA1 3 175 - -
Viun3g00377 225 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Viun3g00377 225 FunFam transcription factor MYB1R1 93 144 - -
Viun3g00377 225 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Viun3g00377 225 SMART sant 91 141 IPR001005 -
Viun3g00377 225 ProSiteProfiles SANT domain profile. 95 143 IPR017884 -
Viun3g00377 225 CDD SANT 94 139 IPR001005 -
Viun3g00377 225 ProSiteProfiles Myb-like domain profile. 87 139 IPR001005 -
Viun3g00377 225 SUPERFAMILY Homeodomain-like 88 143 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00377 Viun-Chr3 2257094 2258412 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun3g00377 Myb_DNA-binding 1.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00377 - - gmx:778093 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00377 3 2257094 2258412 Viun3g00377 3 2257094 2258412 ECH